Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00327 ATGACTGGGAACTGGCGAAATAAGCATCCTCTCCCCTCTACAATCCTTTTCTTTAAGATTATTCTTAGAACCCATGTTCAATATGGAAAACTTAAGCTTCCAAAAGATTTCACTAAGAAATATGGTAGTTGTTTGTCAAACCCAATGTTCCTCAAGCCTCCAGATGGCACTGAATGGAAAGTACATTGGACTAAACACGATGCTGATATTTGGTTTCACGAGGGTTGGAAAGAATTTGCTTCATATTACTCCCTAGATCATGGTCACATGGTGTTGTTTGAGTACAAGCACAATGCTCCTCATTTTGAGGTACATATATTTGAAAAGAATACCCTTGAAATAGAATATCCTTTCCATGGCTGTCAAGAAGGACAAAACAACCTTGACCAAATTAGTGAAGACTCAGTTGAAATTTTGGATGAGCTAACTCCATGCCAGAAGACTAGACTAAAATCACGAATGTCATGTCCTCAACCGCGCAAGAAATTGAGAACTGGCACTACTGGAGATGTTGGAAGAAGCTCCCAATTGCAAAATCTGCCTAAATATGAACAAGTTAAAGGTGATCAATTTCAAGGAACTGACTTTGAGAAGTCAACATTTGCATCTGCCAATAAAGAATCGGATGGGGATATGGTTGGTGACACTGATAGCCTTAAAGCGGAGCAGTTAACTTCTAAAATTACTGAAGCTTTAAACAGAGCCACAAACTTCATATCTAAAAATCCCTCTTTCATTGTTGTCATGAGACCTTTTGATGTTGATGCATACTTGAATGTGCCGTCTCAATTTGCTGAAAAATATTTGAAGAAAAATCAAAGGGATATCATCCTTCAGGTCTTGGATGGGAGAACTTGGCCTGGTAGATATACCCTAGGGAAAATTGACGCTGGGTGGAAGAGATTTGCATCAGATAATAATTTGAAAGTGGGGGATGTTTGCCTCTTTGAGCTGACCAAGAGCCAAGACCTTTCTTTGAAAGTATTAATCTTCCGACTTGGGGAAGAATCACATACCCCTCCACCACAAGGTGGGAAGGCAACTCAATCCTTCACACATGAAGCTCTCAAAGAAGCTAAAAAATTCACATTGGAAAATCCATTTTTCACAGTCAATATAAAGCATCATCATCGGCATGATTACAGACCGAAGCTTCCAAAAGATTTCACTTGGAAATATGGTAGTTGTTTGTCAAACCCAATGTTCCTCAAGCCTCCAGATGGCACTGAATGGAAAGTACATTGGACTAAACATGATGCTGATATTTGGTTTCATGAGGGTTGGAAAGAATTTGCTTCATATTACTCCATAGATCATGGGCACATGGTGTTGTTTGAGTACAAGCACAATACTCCTCATTTTGAGGTACATATATTTGAAAAGAATCCCCTTGAAATAGAATATCCTTTCCATGGCTGTCAAGAAGAACAAGACAACGTTGACCAAATTAGCGAAGACTCAGTTGAAATTTTGGATGAGCTACCTCCATGCCAGAAGACTAGACTAAAATCACGAATATCATGTGCTCAACCGCGCAAGAAATTGAGAACTGGCACTACTGGAGATGTTGGAAGAAGCTCCCAATTGCAAAATCTGCCTAAACAAGACCAAGTTAAAGGTGATCAGTTTCAAGGAACTGACTTTGAGAAGTCAACATTTGCATCTGCCAATAAAGAATCGGATGGCGATATGGTTGGTGACACTGAAAGCCTTAAAGCGGAGCAGTTAACTTCTAAAATTACTGAAGCTTTAAACAGAGCCACAAACTTCATATCTAAAGATCCCTCTTTCATTGTTGTCATGAGACCTTCCGATGTTGATGCATACTTGAATGTGCCGTCACAATTTGCAGAAAAATATTTGAAGAAAAATCAAAGGGATATCATCCTTCAGGTCTTGGATGGGAGAACTTGGCCTGGTAGATATACTCTAGGGAAAATTGACGCTGGGTGGAAGAGATTTGCATCTGATAATAATTTGAAAGTGGGGGATGTTTGCCTCTTTGAGCTGACCAAGAGCCAAGACCTTTCTTTGAATGTATTAATCTTTCGACCTGGGGAAGAATCACATACCCCTCCACCACAAGGTGGGAAGGCAACTCAATCCTTCACACAAGAAGCTCTCAAAGAAGCTAATAAATTCACATCGGAAAATCCATTTTTCACAGTCAAGATAAAGCCTCATCATCGGCATGATTATAGACCGCTTGTACCAACTGCCTTCTTCAGAAAGTACTTGGATAAAAATATGCAGATTGTCAAGTTACAGTTTGGAAAGAAATTGTGGCCTGTCAAGTTGCTCTATCATCCATCCGGAGCTTCAGTCAAGTTGTCTAGTGGTTGGATCCGATTTGCGAGAGAAAGTAAATTGGTAGGAGATGTTTGTGTCTTTGAGCTCATTAACAAGGAAGATGCTGTGCTTGATGTTCATATTTTCAGAGGCAACTCTTAG 2451 0.3978 MTGNWRNKHPLPSTILFFKIILRTHVQYGKLKLPKDFTKKYGSCLSNPMFLKPPDGTEWKVHWTKHDADIWFHEGWKEFASYYSLDHGHMVLFEYKHNAPHFEVHIFEKNTLEIEYPFHGCQEGQNNLDQISEDSVEILDELTPCQKTRLKSRMSCPQPRKKLRTGTTGDVGRSSQLQNLPKYEQVKGDQFQGTDFEKSTFASANKESDGDMVGDTDSLKAEQLTSKITEALNRATNFISKNPSFIVVMRPFDVDAYLNVPSQFAEKYLKKNQRDIILQVLDGRTWPGRYTLGKIDAGWKRFASDNNLKVGDVCLFELTKSQDLSLKVLIFRLGEESHTPPPQGGKATQSFTHEALKEAKKFTLENPFFTVNIKHHHRHDYRPKLPKDFTWKYGSCLSNPMFLKPPDGTEWKVHWTKHDADIWFHEGWKEFASYYSIDHGHMVLFEYKHNTPHFEVHIFEKNPLEIEYPFHGCQEEQDNVDQISEDSVEILDELPPCQKTRLKSRISCAQPRKKLRTGTTGDVGRSSQLQNLPKQDQVKGDQFQGTDFEKSTFASANKESDGDMVGDTESLKAEQLTSKITEALNRATNFISKDPSFIVVMRPSDVDAYLNVPSQFAEKYLKKNQRDIILQVLDGRTWPGRYTLGKIDAGWKRFASDNNLKVGDVCLFELTKSQDLSLNVLIFRPGEESHTPPPQGGKATQSFTQEALKEANKFTSENPFFTVKIKPHHRHDYRPLVPTAFFRKYLDKNMQIVKLQFGKKLWPVKLLYHPSGASVKLSSGWIRFARESKLVGDVCVFELINKEDAVLDVHIFRGNS* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00327 816 ProSiteProfiles B3 DNA-binding domain profile. 368 462 IPR003340 GO:0003677
Rops1g00327 816 ProSiteProfiles B3 DNA-binding domain profile. 595 686 IPR003340 GO:0003677
Rops1g00327 816 SUPERFAMILY DNA-binding pseudobarrel domain 240 333 IPR015300 -
Rops1g00327 816 CDD B3_DNA 243 332 IPR003340 GO:0003677
Rops1g00327 816 CDD B3_DNA 16 107 IPR003340 GO:0003677
Rops1g00327 816 PANTHER B3 DOMAIN-CONTAINING 712 810 - -
Rops1g00327 816 Gene3D - 13 111 IPR015300 -
Rops1g00327 816 SUPERFAMILY DNA-binding pseudobarrel domain 593 686 IPR015300 -
Rops1g00327 816 SUPERFAMILY DNA-binding pseudobarrel domain 13 110 IPR015300 -
Rops1g00327 816 SUPERFAMILY DNA-binding pseudobarrel domain 364 462 IPR015300 -
Rops1g00327 816 Pfam B3 DNA binding domain 368 461 IPR003340 GO:0003677
Rops1g00327 816 Pfam B3 DNA binding domain 597 684 IPR003340 GO:0003677
Rops1g00327 816 Pfam B3 DNA binding domain 17 109 IPR003340 GO:0003677
Rops1g00327 816 Pfam B3 DNA binding domain 258 332 IPR003340 GO:0003677
Rops1g00327 816 Pfam B3 DNA binding domain 720 814 IPR003340 GO:0003677
Rops1g00327 816 ProSiteProfiles B3 DNA-binding domain profile. 243 334 IPR003340 GO:0003677
Rops1g00327 816 CDD B3_DNA 719 813 IPR003340 GO:0003677
Rops1g00327 816 ProSiteProfiles B3 DNA-binding domain profile. 720 815 IPR003340 GO:0003677
Rops1g00327 816 MobiDBLite consensus disorder prediction 150 175 - -
Rops1g00327 816 CDD B3_DNA 368 459 IPR003340 GO:0003677
Rops1g00327 816 CDD B3_DNA 595 684 IPR003340 GO:0003677
Rops1g00327 816 SMART B3_2 245 334 IPR003340 GO:0003677
Rops1g00327 816 SMART B3_2 597 686 IPR003340 GO:0003677
Rops1g00327 816 SMART B3_2 720 815 IPR003340 GO:0003677
Rops1g00327 816 SMART B3_2 17 110 IPR003340 GO:0003677
Rops1g00327 816 SMART B3_2 368 462 IPR003340 GO:0003677
Rops1g00327 816 SUPERFAMILY DNA-binding pseudobarrel domain 714 814 IPR015300 -
Rops1g00327 816 ProSiteProfiles B3 DNA-binding domain profile. 16 110 IPR003340 GO:0003677
Rops1g00327 816 Gene3D - 699 815 IPR015300 -
Rops1g00327 816 Gene3D - 347 462 IPR015300 -
Rops1g00327 816 Gene3D - 225 335 IPR015300 -
Rops1g00327 816 Gene3D - 577 686 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00327 Rops-Chr1 8793266 8798065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00327 705 815 B3 DNA Binding Superfamily AT3G18990 40.870 4.25e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g00327 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00327 - - lja:Lj5g3v0508090.1 458.373