Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00326 ATGTCATTTCAAGGTCGTGGCAGTCATAGTAACATCATCCATTTCTTCAAAGTGATTCAAAATCGAGCATTACAAGAAGAAGAGCTTAGGATTCCCAGGAGTTTTGTGAAGAATTATTGGAAAGGATTATCGAACCCAATATTCCTTAAACTCCCGAATGGTGCTGAATGGAAAATGTTTTGGGTAAGACGTGATGGTGATATTTGGCTTCAGAAGAATTGGAAAAAATTTGCTAAGTCGTTGAGTTATGGATATTTTTTGGTTTTTAAATACAAAGGAGGATCACATTTCAAGGTTTTGATATTTGATGATAATGCTTTAGAAATAGACTATTCAACTATAAGATGCAGAGATGGTGAAGGTACCAGCGAACATTATGAACTGGTTGAGGAGAGTGATGATTCTCTTGAAATTCTTGGTGAGATTGAAAGACCCACTCAACCTCTCAAGAAAATGAAAACCAACTCAAATGAAGAAGCTAAAAAATACTTGAAGCCACGTTTTGAAACTAATGGGGCTAGTAGAGGAGGCATGGGTGAGGCTAGGAATGATTCAAGTTCTGAAGCTATTAGAAGGAGAGCCAGGAATTTTCAATCTGACAACCCCTCTTTCACTGTTATCATGAAGCAAACTTACGTCCAAGGCAATTTTTTGATGATACCAACAGAGTTTTCTAGAAGATACTTGTATGGGTTAGAAGGGACTGCAAAGATTGGGGTCGATGGGGATAGGCCTTGGTTTGTTAGGTTCAATTATTCTGGAGAACGAACTATTATGACCACTGGTTGGAAGCAATTTTCCAAGGAACATGACTTACAAGTTGGTGATGAATGTATATTTGAGATGATTGAACGCGAACCAGTTTCATTCAAAGTTACTATTAATCGAGCCAGAGATCAACCAAGTTTGAAGCAGTTGCACGATTCTGAAAATCCTAACATGGAACAGAAGAAATTTGAGGTTTTTGTAAAACCATGTTACCTGGAAACTTCTCCGGGTATACCCAATGAGTTTATGAAAAGATACAGGGGATGTCATGAAAAATTTGTGGAACTGAAAACAAGGGAAACATCATGGTTTGTAAAATTGATATATTATCCAAATTACTGTTGTGGAAAGTTCTCTTCAGGATGGCGTGCATTCACAAGAGGATGTAAATTGAAGACTGGAGATATTTGTCTATTTGAAATGATCGATGAGCAAAATTGTATGCTTAAAGTTTCTATTTCAAGATGTATAGAAGATTGA 1248 0.3678 MSFQGRGSHSNIIHFFKVIQNRALQEEELRIPRSFVKNYWKGLSNPIFLKLPNGAEWKMFWVRRDGDIWLQKNWKKFAKSLSYGYFLVFKYKGGSHFKVLIFDDNALEIDYSTIRCRDGEGTSEHYELVEESDDSLEILGEIERPTQPLKKMKTNSNEEAKKYLKPRFETNGASRGGMGEARNDSSSEAIRRRARNFQSDNPSFTVIMKQTYVQGNFLMIPTEFSRRYLYGLEGTAKIGVDGDRPWFVRFNYSGERTIMTTGWKQFSKEHDLQVGDECIFEMIEREPVSFKVTINRARDQPSLKQLHDSENPNMEQKKFEVFVKPCYLETSPGIPNEFMKRYRGCHEKFVELKTRETSWFVKLIYYPNYCCGKFSSGWRAFTRGCKLKTGDICLFEMIDEQNCMLKVSISRCIED* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00326 415 CDD B3_DNA 202 296 IPR003340 GO:0003677
Rops1g00326 415 SMART B3_2 319 413 IPR003340 GO:0003677
Rops1g00326 415 SMART B3_2 204 298 IPR003340 GO:0003677
Rops1g00326 415 SMART B3_2 15 105 IPR003340 GO:0003677
Rops1g00326 415 SUPERFAMILY DNA-binding pseudobarrel domain 197 296 IPR015300 -
Rops1g00326 415 CDD B3_DNA 14 103 IPR003340 GO:0003677
Rops1g00326 415 ProSiteProfiles B3 DNA-binding domain profile. 334 413 IPR003340 GO:0003677
Rops1g00326 415 MobiDBLite consensus disorder prediction 153 189 - -
Rops1g00326 415 PANTHER B3 DOMAIN-CONTAINING 196 400 - -
Rops1g00326 415 Gene3D - 8 106 IPR015300 -
Rops1g00326 415 Gene3D - 183 300 IPR015300 -
Rops1g00326 415 Gene3D - 302 414 IPR015300 -
Rops1g00326 415 SUPERFAMILY DNA-binding pseudobarrel domain 319 414 IPR015300 -
Rops1g00326 415 Pfam B3 DNA binding domain 333 409 IPR003340 GO:0003677
Rops1g00326 415 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
Rops1g00326 415 Pfam B3 DNA binding domain 204 297 IPR003340 GO:0003677
Rops1g00326 415 SUPERFAMILY DNA-binding pseudobarrel domain 9 104 IPR015300 -
Rops1g00326 415 ProSiteProfiles B3 DNA-binding domain profile. 203 298 IPR003340 GO:0003677
Rops1g00326 415 CDD B3_DNA 334 411 IPR003340 GO:0003677
Rops1g00326 415 MobiDBLite consensus disorder prediction 153 168 - -
Rops1g00326 415 ProSiteProfiles B3 DNA-binding domain profile. 14 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00326 Rops-Chr1 8759374 8761956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00326 319 412 B3 DNA Binding Superfamily AT3G18990 31.250 3.77e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g00326 B3 1.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00326 - - psat:127094583 317.005