Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00325 ATGGCTAGTTCTGGCAATCCTGCCTCCAATCTGAGTGGTGAAGAAGATAGTTGGAGACAGATGTTCGAGGCTCAGATAAATGACATGAACAAACGCCTTAATAATATTCGTGCTGCAATGCCTCCTGCTGGTTCCTTTGAGCCTCTATCGAATGCAGAGTTCAACAGGGCATGTTGGAATGAATATTTATCTAAATGTGAATATCAAGTTCCTAACGTCCCTACTGAGCAGTCATTGATTAAAGCAATTGACACTTTTGGTAACCATGTTCGTGAGCATCACATCCTGAACTTTCTCCAAGTTGGTAACAATAAACAGTTGTTAGCTGATTATGTTAATGCTCAGATCTGTGAGTTTGAAGCTTCCGTTGACAAGAAGCCTGCAAAGCTATTTCGCCGCCTCTTGAGAAATATTATACCATCGGAATTTTCAAGAAAATACTTGCATGGGTTGAAAGGAATTGCAAAGATTAGGGTTGGTCAGGACAGGACTAGAGAGGTGAAGTTCAGCTTCTGTGATTCTAGTAAACGAACTATGATGAGCACTGGTTGGAAGCCATTTGCCAAGCATTACAACTTAAAAGCTGGTGATGAATGTACTTTTGAGATGACTGAACAAAATCCAGTTACATTCAGAATTAGTATTATCCGAGCCAGAGATAAACCAAGTTCCAAGCAGATGCAAGGTAAGAAGTTGGAAGAAAATAAGGAACATTTGAGCAATTTTCGGAGGGATCAATTTAAAAAAGAAGATTGA 756 0.3968 MASSGNPASNLSGEEDSWRQMFEAQINDMNKRLNNIRAAMPPAGSFEPLSNAEFNRACWNEYLSKCEYQVPNVPTEQSLIKAIDTFGNHVREHHILNFLQVGNNKQLLADYVNAQICEFEASVDKKPAKLFRRLLRNIIPSEFSRKYLHGLKGIAKIRVGQDRTREVKFSFCDSSKRTMMSTGWKPFAKHYNLKAGDECTFEMTEQNPVTFRISIIRARDKPSSKQMQGKKLEENKEHLSNFRRDQFKKED* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00325 251 ProSiteProfiles B3 DNA-binding domain profile. 138 219 IPR003340 GO:0003677
Rops1g00325 251 MobiDBLite consensus disorder prediction 220 251 - -
Rops1g00325 251 CDD B3_DNA 138 217 IPR003340 GO:0003677
Rops1g00325 251 Gene3D - 115 221 IPR015300 -
Rops1g00325 251 SUPERFAMILY DNA-binding pseudobarrel domain 136 217 IPR015300 -
Rops1g00325 251 Coils Coil 19 39 - -
Rops1g00325 251 MobiDBLite consensus disorder prediction 223 251 - -
Rops1g00325 251 SMART B3_2 131 219 IPR003340 GO:0003677
Rops1g00325 251 Pfam B3 DNA binding domain 137 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00325 Rops-Chr1 8732038 8745899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00325 126 220 B3 DNA Binding Superfamily AT3G18990 27.368 1.90e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g00325 B3 1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00325 - - mtr:120578013 101.679