Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00324 ATGTCTTCTCAAGATCATCAGAGTAATGGCCTCCACTTTTTTAAGGTTATTCTTGAAAGCTGCCTTCAAGATGGAGAGCTGAGAGTGCCCAGAAGTTTTACGAGGAGGCATTGGCAAGGAATATCAAACTCGGTTTTTTTAAGGCTTCCAAACAGGACTGAATGGAAAGTTTGTTGGAAGAAACGTGATGGTGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAGAATACTTGTCATTGGATGTGTCACAATTTATGGTGTTTCGATATGAAGAAAATTCTTGCTTTAATGTGATTGTATTTGGTAAAAATGCCTTAGAAATAAAATACCCTTCAAGAAGTACTGATGAAGAAGATGAAGAGGCTGATGAGAGTGATTATTCTTTGAAAATTCCTGACGATGACTCACCATTAGAGGGTAAAAGGCCAAGATCTCCATCACCTTCTTCTCAAACTCCTAAGAAGATTAAAACCAACCAACAAAAAGAACATGCAGGTAGTAGCAAAGATATGAAGGCGAGAATCAGAACTTTCCACGAGAAAGTGAAGAAGAATTTCCGCATTGAGAATGATTTTTTCACGTGTGCAATACAAGAATCATACGCTCGCAGAGATATCCTGATGGTTCCAACAGAGTTTTCTAGAAAGTACTTGAATGGGTTAGAAGGGACTGCAAAGATTGGTGTTGATTCTGAAAGTCCTGATATGGAACAGAATAAATTTGAGTTTTCTATGAAACCAAGTTACCTGAAGAATTCTCCGAGGATACCAAATGAGCTTTTAAAGAGACATAGTGGATGTCGTGAAAAATCTGTGGAGTTGAATTTTGGAGAAACATCGTGGCGTGCAAAAATGATATATTATTCAGATCAACGTTGTGGTAGTAGATTTTCTTCTGGGTGGCGTGAATTTGTAAGAGGATGTAAATTGAAGGTTGGAGACATATGTAGATTTGAGATGATTGATGAAGAAAGTTTTAAGCTCAAAGTTTCAATTTCAAGAAACTCCCATTGA 1017 0.3727 MSSQDHQSNGLHFFKVILESCLQDGELRVPRSFTRRHWQGISNSVFLRLPNRTEWKVCWKKRDGDVWFCNGWKEFAEYLSLDVSQFMVFRYEENSCFNVIVFGKNALEIKYPSRSTDEEDEEADESDYSLKIPDDDSPLEGKRPRSPSPSSQTPKKIKTNQQKEHAGSSKDMKARIRTFHEKVKKNFRIENDFFTCAIQESYARRDILMVPTEFSRKYLNGLEGTAKIGVDSESPDMEQNKFEFSMKPSYLKNSPRIPNELLKRHSGCREKSVELNFGETSWRAKMIYYSDQRCGSRFSSGWREFVRGCKLKVGDICRFEMIDEESFKLKVSISRNSH* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00324 338 Gene3D - 230 337 IPR015300 -
Rops1g00324 338 MobiDBLite consensus disorder prediction 158 172 - -
Rops1g00324 338 PANTHER B3 DOMAIN-CONTAINING 5 325 - -
Rops1g00324 338 SUPERFAMILY DNA-binding pseudobarrel domain 7 105 IPR015300 -
Rops1g00324 338 Pfam B3 DNA binding domain 246 336 IPR003340 GO:0003677
Rops1g00324 338 Pfam B3 DNA binding domain 14 101 IPR003340 GO:0003677
Rops1g00324 338 SUPERFAMILY DNA-binding pseudobarrel domain 237 333 IPR015300 -
Rops1g00324 338 MobiDBLite consensus disorder prediction 113 172 - -
Rops1g00324 338 CDD B3_DNA 12 102 IPR003340 GO:0003677
Rops1g00324 338 Gene3D - 5 106 IPR015300 -
Rops1g00324 338 CDD B3_DNA 246 335 IPR003340 GO:0003677
Rops1g00324 338 ProSiteProfiles B3 DNA-binding domain profile. 281 337 IPR003340 GO:0003677
Rops1g00324 338 SMART B3_2 13 105 IPR003340 GO:0003677
Rops1g00324 338 SMART B3_2 193 337 IPR003340 GO:0003677
Rops1g00324 338 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00324 Rops-Chr1 8648433 8651852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00324 13 335 B3 DNA Binding Superfamily AT3G18990 25.806 1.52e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g00324 B3 1.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00324 - - lang:109332968 251.906