Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g00323 | ATGTCTCCTCAAGGACTTGATCATCAGAGTAATGGTGTCCACTTTTTTAAGGTTATTCTTGAAAGCAACCTTCAAGATGGAGAGCTGAAAGTTCCCAGAAGCTTTACGAGGAGGCATTGGCAAGGAATATCAAACCCGGTTTTTTTAAGGCTTCCAAACAGGACTGAATGGAAAGTTTGTTGGAAGAAACGTGATGGTGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAGAATACTTGTCTTTGGATGTGTCACAGTTTGTGGTGTTTCAATATGAAGAAAATTCTGGCTTTAATGTGATTGTATTTGGTAAAAGGGCCTTAGAAATAAAATACCCTTCAAGATGTACTGATGAAGAAGGTGAAGAGGTTGATGAGAGTGATTATTCTTTGAAAATTATTGAGGATTGTTCACCAATGGAGGTTCAAAGGCCAAAGTCTCCATCACCATCTTCTCGAACTCCTAAGAAGATGAAAACCAACCCACAAGAAGAACATGCAGATTTTGACAATACTAATCATATGAACAGTGACCCAGAAGGGCTTTCTCGAAGGCCTTTTTCACCTCTTAAAACCACTGAAACTCCCAAAGCCGGCAGCAGATTAATGTTGAAGAATGACTTCAATCTTTGCATCAAGCCTCCATTGAACCTAGCGATAATACCAATTAATTTCATCAGGAATTACAAACTTGCACAACATGGAAAAGTTGCAACCTTGCGAGTTGGGGAGAGATCATGGTCTGTAAAACTGCTTTATTATGATTACAGTTCCTCTGCTAGATTCTCTCATGGTTGGTCTAATTTTGTGAGGGGTTGTAACTTGAAAGTTGGTGACACTTGTTTCTTTAAGATGATCGATGAGGAAACTTTCGAGCTTGAAGTTACAATTTCAAGACGCATCCACTAA | 912 | 0.3893 | MSPQGLDHQSNGVHFFKVILESNLQDGELKVPRSFTRRHWQGISNPVFLRLPNRTEWKVCWKKRDGDVWFCNGWKEFAEYLSLDVSQFVVFQYEENSGFNVIVFGKRALEIKYPSRCTDEEGEEVDESDYSLKIIEDCSPMEVQRPKSPSPSSRTPKKMKTNPQEEHADFDNTNHMNSDPEGLSRRPFSPLKTTETPKAGSRLMLKNDFNLCIKPPLNLAIIPINFIRNYKLAQHGKVATLRVGERSWSVKLLYYDYSSSARFSHGWSNFVRGCNLKVGDTCFFKMIDEETFELEVTISRRIH* | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g00323 | 303 | Gene3D | - | 7 | 108 | IPR015300 | - | |
Rops1g00323 | 303 | SUPERFAMILY | DNA-binding pseudobarrel domain | 218 | 300 | IPR015300 | - | |
Rops1g00323 | 303 | SUPERFAMILY | DNA-binding pseudobarrel domain | 9 | 106 | IPR015300 | - | |
Rops1g00323 | 303 | MobiDBLite | consensus disorder prediction | 141 | 196 | - | - | |
Rops1g00323 | 303 | CDD | B3_DNA | 14 | 104 | IPR003340 | GO:0003677 | |
Rops1g00323 | 303 | ProSiteProfiles | B3 DNA-binding domain profile. | 14 | 107 | IPR003340 | GO:0003677 | |
Rops1g00323 | 303 | MobiDBLite | consensus disorder prediction | 159 | 174 | - | - | |
Rops1g00323 | 303 | Gene3D | - | 192 | 302 | IPR015300 | - | |
Rops1g00323 | 303 | PANTHER | B3 DOMAIN-CONTAINING | 10 | 290 | - | - | |
Rops1g00323 | 303 | CDD | B3_DNA | 221 | 300 | IPR003340 | GO:0003677 | |
Rops1g00323 | 303 | ProSiteProfiles | B3 DNA-binding domain profile. | 221 | 302 | IPR003340 | GO:0003677 | |
Rops1g00323 | 303 | SMART | B3_2 | 209 | 302 | IPR003340 | GO:0003677 | |
Rops1g00323 | 303 | SMART | B3_2 | 15 | 107 | IPR003340 | GO:0003677 | |
Rops1g00323 | 303 | Pfam | B3 DNA binding domain | 220 | 301 | IPR003340 | GO:0003677 | |
Rops1g00323 | 303 | Pfam | B3 DNA binding domain | 15 | 103 | IPR003340 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g00323 | Rops-Chr1 | 8614491 | 8617114 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g00323 | 15 | 300 | B3 DNA Binding Superfamily | AT3G18990 | 25.749 | 3.14e-26 | 104 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Rops1g00323 | B3 | 3.1e-11 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g00323 | - | - | lang:109332968 | 238.81 |