Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00323 ATGTCTCCTCAAGGACTTGATCATCAGAGTAATGGTGTCCACTTTTTTAAGGTTATTCTTGAAAGCAACCTTCAAGATGGAGAGCTGAAAGTTCCCAGAAGCTTTACGAGGAGGCATTGGCAAGGAATATCAAACCCGGTTTTTTTAAGGCTTCCAAACAGGACTGAATGGAAAGTTTGTTGGAAGAAACGTGATGGTGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAGAATACTTGTCTTTGGATGTGTCACAGTTTGTGGTGTTTCAATATGAAGAAAATTCTGGCTTTAATGTGATTGTATTTGGTAAAAGGGCCTTAGAAATAAAATACCCTTCAAGATGTACTGATGAAGAAGGTGAAGAGGTTGATGAGAGTGATTATTCTTTGAAAATTATTGAGGATTGTTCACCAATGGAGGTTCAAAGGCCAAAGTCTCCATCACCATCTTCTCGAACTCCTAAGAAGATGAAAACCAACCCACAAGAAGAACATGCAGATTTTGACAATACTAATCATATGAACAGTGACCCAGAAGGGCTTTCTCGAAGGCCTTTTTCACCTCTTAAAACCACTGAAACTCCCAAAGCCGGCAGCAGATTAATGTTGAAGAATGACTTCAATCTTTGCATCAAGCCTCCATTGAACCTAGCGATAATACCAATTAATTTCATCAGGAATTACAAACTTGCACAACATGGAAAAGTTGCAACCTTGCGAGTTGGGGAGAGATCATGGTCTGTAAAACTGCTTTATTATGATTACAGTTCCTCTGCTAGATTCTCTCATGGTTGGTCTAATTTTGTGAGGGGTTGTAACTTGAAAGTTGGTGACACTTGTTTCTTTAAGATGATCGATGAGGAAACTTTCGAGCTTGAAGTTACAATTTCAAGACGCATCCACTAA 912 0.3893 MSPQGLDHQSNGVHFFKVILESNLQDGELKVPRSFTRRHWQGISNPVFLRLPNRTEWKVCWKKRDGDVWFCNGWKEFAEYLSLDVSQFVVFQYEENSGFNVIVFGKRALEIKYPSRCTDEEGEEVDESDYSLKIIEDCSPMEVQRPKSPSPSSRTPKKMKTNPQEEHADFDNTNHMNSDPEGLSRRPFSPLKTTETPKAGSRLMLKNDFNLCIKPPLNLAIIPINFIRNYKLAQHGKVATLRVGERSWSVKLLYYDYSSSARFSHGWSNFVRGCNLKVGDTCFFKMIDEETFELEVTISRRIH* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00323 303 Gene3D - 7 108 IPR015300 -
Rops1g00323 303 SUPERFAMILY DNA-binding pseudobarrel domain 218 300 IPR015300 -
Rops1g00323 303 SUPERFAMILY DNA-binding pseudobarrel domain 9 106 IPR015300 -
Rops1g00323 303 MobiDBLite consensus disorder prediction 141 196 - -
Rops1g00323 303 CDD B3_DNA 14 104 IPR003340 GO:0003677
Rops1g00323 303 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Rops1g00323 303 MobiDBLite consensus disorder prediction 159 174 - -
Rops1g00323 303 Gene3D - 192 302 IPR015300 -
Rops1g00323 303 PANTHER B3 DOMAIN-CONTAINING 10 290 - -
Rops1g00323 303 CDD B3_DNA 221 300 IPR003340 GO:0003677
Rops1g00323 303 ProSiteProfiles B3 DNA-binding domain profile. 221 302 IPR003340 GO:0003677
Rops1g00323 303 SMART B3_2 209 302 IPR003340 GO:0003677
Rops1g00323 303 SMART B3_2 15 107 IPR003340 GO:0003677
Rops1g00323 303 Pfam B3 DNA binding domain 220 301 IPR003340 GO:0003677
Rops1g00323 303 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00323 Rops-Chr1 8614491 8617114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00323 15 300 B3 DNA Binding Superfamily AT3G18990 25.749 3.14e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g00323 B3 3.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00323 - - lang:109332968 238.81