Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00322 ATGAAGCCCGAGTTGTACGAAATCTCCGATGACGAATGGGAAAATCACTCATTCAAACCCTCACGAGTTCTCAAGAGACCTCGCACTTCATCTCCACCACCACCGATCGAGTCCTTCGCTTACACTCCACGCAACCACAACAAGCGCGAGGTTTCTTCCTCTTCCGACGATGACTGCGTCGAAATCACGCGTAACGAGACGGATTTTCCTGAAAGCCTCGATGAATTGGAGGATGCTGACGTGGACGACGGTGACGGCGGAGGAAGTAACGCGGCGGCGAGCCGTGGACGGAGGTTTATAATCGATGACGATGATGAGGATGACGATGGCGACGGTGATAGGAATGCAGGTGATGTGGATTTGTATGAGGTAGGGTCCAGCGAGGAGGAGGAAGATGATGTGGTTAGTAGGGCTTTGCATAAGTGCGCGAGAATCTCTGTGGAGTTGAAGGGTGAACTTTTCGGTTCTTCGGGAACCGCTTGTGAGAGGTATTCAGAGGTGGAATCTTCTTCAGTGAGAATCGTAACTCAGGAGGATATTGATGTTGCTTGTGGGTCTGAGGATTCGGATTTTCAGCCTCTGCTCAAGCCGTATCAGTTGGTTGGTGTCAATTTCTTGCTGCTGTTGTATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTCGGTAAAACAATTCAGGCCATCACATATTTAACTTTGTTAAAGCACTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGAGAACTAAAAAGGTGGTGCCCATCCTTTTCTGTTCTTCAATATCATGGGGCTGGACGCGCGGCATACTGCAAGGAGTTGAACTCCTTGTCCAAGATGGGATTGCCTCCCCCATTTAACGTCCTTCTCGTGTGCTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAGCGTTGGAGGTGGAGCTGTGTGCTGATGGATGAGGCACACGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCCGTTGCCCGAAATGCAAACCAACGCTTGATGCTGACCGGGACACCACTTCAGAATGATCTACATGAGTTATGGTCATTATTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACTTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTGATTGGTAGGATGAAATCCATCTTAGGGCCATTTATTTTACGTCGTCTAAAATCTGATGTGATGCAGCAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTACAAGGAAGCCATTGAGGAGTATCGAGCTGTTTCACAAGCTCGGATAGCAAAATATTCTGATCCTAACTCAAAAAGTGTTCTTGAAGTTCTTCCAAGACGACAAATAAATAACTATTTTGTTCAGTTCCGAAAGATTGCAAACCATCCCTTGTTGATAAGGCGAATTTATAACGATGAGGATGTCATTCGCTTTGCTAGGAAGCTGCATCCGATAGGTGCTTTTGGCCATGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAGTTACAATGACTTCTCTATCCACAGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCGTTTAAGAAGAGTGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACTTAA 1863 0.4439 MKPELYEISDDEWENHSFKPSRVLKRPRTSSPPPPIESFAYTPRNHNKREVSSSSDDDCVEITRNETDFPESLDELEDADVDDGDGGGSNAAASRGRRFIIDDDDEDDDGDGDRNAGDVDLYEVGSSEEEEDDVVSRALHKCARISVELKGELFGSSGTACERYSEVESSSVRIVTQEDIDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYCKELNSLSKMGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQENAYKEAIEEYRAVSQARIAKYSDPNSKSVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGHECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSFKKSGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGST* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00322 620 Gene3D - 175 446 IPR038718 -
Rops1g00322 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 421 IPR027417 -
Rops1g00322 620 MobiDBLite consensus disorder prediction 49 70 - -
Rops1g00322 620 PANTHER SNF2/RAD54 HELICASE FAMILY 103 620 - -
Rops1g00322 620 Pfam SNF2-related domain 215 501 IPR000330 GO:0005524|GO:0140658
Rops1g00322 620 MobiDBLite consensus disorder prediction 1 130 - -
Rops1g00322 620 CDD DEXHc_Snf 195 388 - -
Rops1g00322 620 SMART ultradead3 191 396 IPR014001 -
Rops1g00322 620 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g00322 620 Gene3D - 557 620 IPR027417 -
Rops1g00322 620 CDD SF2_C_SNF 561 620 - -
Rops1g00322 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 386 IPR014001 -
Rops1g00322 620 FunFam Protein CHROMATIN REMODELING 19 isoform A 166 444 - -
Rops1g00322 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 620 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00322 Rops-Chr1 8526863 8537630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00322 216 619 RAD5 or RAD16-like Gene Family AT5G22750 24.665 1.34e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops1g00322 SNF2_N 6.5e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00322 K14439 - gmx:100806323 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00322 1 8526863 8537630 Rops1g00322 1 8526863 8537630 ECH