Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00321 ATGAAAGGGTATGCTGACAGAAAAAGGAGAGATGTTATATTTGAAGTGGGTGACAAGGTGTTCCTCAAGGCACAACCATATAGGGTGAAATCTTTAGCCCACAGGAGGAATGAAAAGTTGAGTCCTCGGTTTTTTGGACCCTTTGAGGTGGTGGAAAGAATTGGAGAAGTGGCATACAGGCTAGCATTACCAACTCACAGCAAGGTTCACCCTGTTTTTCATGTGAGCAAGTTAAAAAAGGCTCTTCCTACAGCTCAGATTCCTCAGTCTTTACCTATGGAACTTACTGATGAATGGGAATTGCCACTGGAACCTGAGGAAGTTTTAGCATTCAGGATCAACAAATCTGGTGTAGCAGAAGTTTTGATTAAATGGCAAGGGTGTCCTTCCTCTGATAATACTTGGGAAGTCTTTGAGGATCTCCACAGGTGTTTTCCTTCTTGTCTCCTTGAGGACAAGGTAGCAGAGAGACAAACAATAGTTGATACGTTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACAAGAGCTGGTGGACAAGGCTTAAACTTAACAGGAGCTGATACGGTTGTGATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCAGAAGATCGTTGTCATCGAATCGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTACGAGATTGCAAAGAGAAAGCTAGTATTAGATGCTGCTGTTCTCGAGTCCATGGAGGTGATTAATGAAGATGACATGCCTGAGAAGACCATGGGAGAAATATTGTCCGCAATTTTGTTGAGTTAA 831 0.4176 MKGYADRKRRDVIFEVGDKVFLKAQPYRVKSLAHRRNEKLSPRFFGPFEVVERIGEVAYRLALPTHSKVHPVFHVSKLKKALPTAQIPQSLPMELTDEWELPLEPEEVLAFRINKSGVAEVLIKWQGCPSSDNTWEVFEDLHRCFPSCLLEDKVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEVINEDDMPEKTMGEILSAILLS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00321 276 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 154 270 - -
Rops1g00321 276 Pfam Helicase conserved C-terminal domain 154 215 IPR001650 -
Rops1g00321 276 SUPERFAMILY Chromo domain-like 67 145 IPR016197 -
Rops1g00321 276 Gene3D - 103 144 - -
Rops1g00321 276 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 112 256 IPR001650 -
Rops1g00321 276 CDD SF2_C_SNF 153 226 - -
Rops1g00321 276 SMART chromo_7 102 157 IPR000953 -
Rops1g00321 276 Pfam Chromo (CHRromatin Organisation MOdifier) domain 104 149 IPR023780 -
Rops1g00321 276 ProSiteProfiles Chromo and chromo shadow domain profile. 103 144 IPR000953 -
Rops1g00321 276 SMART helicmild6 132 215 IPR001650 -
Rops1g00321 276 Gene3D - 145 274 IPR027417 -
Rops1g00321 276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 270 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00321 Rops-Chr1 8521907 8524194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00321 107 261 RAD5 or RAD16-like Gene Family AT1G05120 34.568 3.57e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00321 K14439 - gmx:100798038 238.81