Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00320 ATGGCTGCTGCTTCCTCATCCACACCCTTCTTGGAAATCAGACAAGAGAATCAAAGTCAGATTACACAAAACCAATCCTCCACAGCTGCTTCCTCAACCGCTGCTACACCTGTAGTGCCTCAAAAGAAAAGGAGGAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTTTCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACTTGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGGATTAAGAAACACTTCTCTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCCCATTCCAAAACCTGTGGCACAAGGGAATATAGATGTGACTGTGGCACTCTCTTTTCCAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCATTAGCACACGAGAGTGCAAGACACCCTTCAAACCTGAACCCTTTAGGGACTCATCATCTGTTTGGCACAAACCACATGAGCTTAGGCCTATCCCAAGTGGGTACCCAACTTCAGAACCAAAACCAAACAGCCACCAACAGTATCTTAAGCCTAGGAAGTGCTGGTGCACCAAAATATGAGCACTTAATTTCACCTTTGCATCATCAAACATCATCATTTGGACAGTCACCACAGTCAATGTCTTCCTCACCTTTCTTCATGACTGACCCAAATCAAGGATTTCAAGACCTCCAACAATCTCATCAAGGATCATTCTCAAACAAGCAACTGCATGGTCTCATGCAACTTGCTGATCTTCAAGGAACAACCAATAATAACACTACTTCTGCATCATCAGTTTCTCATTCAGCTGCCAATCTTTTTAACCTCAGCTTCTTTCCAAATAGCAATAGCAGTGGCAACACAATCCCTGATCAATTCAACAACAACAACATAAGTGGAGGTAACCAAGGAACAACAACAACAGCACTCTACACTAATAGCCCTGTGAGTAATAATCAAGTTGGTTCAGGTTTGTCTTCACTCTTTGCCAATCAAGAGAACAATATGTCACCACATATGTCAGCCACTGCATTGCTTCAAAAAGCTGCTCAAATGGGTTCAACCACAACCACCAATGGTTCCTCTCTATTAAGAGGAATTGGTAGTTCTTCAACCAATGGTTCAGAATCTGATCACACTCAACTTAATAATCTTGGTATAAGATCAAGCATGGAAAATGATCAACACCATCTACGTGGGCTGATGAACTCTCTTGCCAATGGAAACAGTTCAATATTTGGCAATGTGAAAGGGAATGAAAACAACCTTGGACAGTTTCACAATGTAGAAGAGCCTAAAAAGTTGTCTCAAAATCTTGGTGTGTGCTTTGGAGGATCTGATAAGTTGACTTTGGACTTTCTTGGTGTTGGAGGAATGGTGAGGAACATGAGTGGTGGGTTTTCACAAAGAGAGCAACTACATTCCATTGGCACCATGAACTCCTTGGACCCTAAACTTGAATCATCACAAGCAAATCAACCTTTTGGAAACACAACACTGCAATAA 1698 0.4299 MAAASSSTPFLEIRQENQSQITQNQSSTAASSTAATPVVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHHLFGTNHMSLGLSQVGTQLQNQNQTATNSILSLGSAGAPKYEHLISPLHHQTSSFGQSPQSMSSSPFFMTDPNQGFQDLQQSHQGSFSNKQLHGLMQLADLQGTTNNNTTSASSVSHSAANLFNLSFFPNSNSSGNTIPDQFNNNNISGGNQGTTTTALYTNSPVSNNQVGSGLSSLFANQENNMSPHMSATALLQKAAQMGSTTTTNGSSLLRGIGSSSTNGSESDHTQLNNLGIRSSMENDQHHLRGLMNSLANGNSSIFGNVKGNENNLGQFHNVEEPKKLSQNLGVCFGGSDKLTLDFLGVGGMVRNMSGGFSQREQLHSIGTMNSLDPKLESSQANQPFGNTTLQ* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00320 565 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Rops1g00320 565 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 534 IPR031140 -
Rops1g00320 565 MobiDBLite consensus disorder prediction 544 565 - -
Rops1g00320 565 MobiDBLite consensus disorder prediction 1 54 - -
Rops1g00320 565 FunFam protein indeterminate-domain 12-like 50 118 - -
Rops1g00320 565 SMART c2h2final6 71 93 IPR013087 -
Rops1g00320 565 SMART c2h2final6 147 167 IPR013087 -
Rops1g00320 565 SMART c2h2final6 112 142 IPR013087 -
Rops1g00320 565 Gene3D Classic Zinc Finger 125 204 - -
Rops1g00320 565 Gene3D Classic Zinc Finger 54 119 - -
Rops1g00320 565 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Rops1g00320 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Rops1g00320 565 MobiDBLite consensus disorder prediction 419 446 - -
Rops1g00320 565 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Rops1g00320 565 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Rops1g00320 565 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00320 Rops-Chr1 8506500 8511378 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00320 10 529 IDZ Gene Family AT2G02070 45.769 2.97e-132 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g00320 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00320 K25870 - gmx:100806198 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00320 1 8506500 8511378 Rops1g00320 1 8506500 8511378 ECH