Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00317 ATGGCAGCATCTTTTTCTGCAGCATCATTCTTAGGAATCAGAGAAGAAGATCAGAATCAGATGAAACAGCAACAGAATTCCTCAACACCATCATCATCAACAACTCCAGCTGCACCACCACCACCCCAAAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAGCCCACTTGTGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGGATTAAGAAACACTACTATAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCTGATTGGAAAGCCCATTCCAAAACCTGTGGCACCAGGGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACTCACAGGGCCTTTTGTGATGCACTGGCACAAGAAAATGCAAGACCACCAACACCCAACCTGAGCAGTGCCATTAGCAGCCAACTTTATGGAAATAGCAACATGTCCTTAGGCTTATCTCAAATTGCTTCACAAATCTCATCCATCCAAAACCAGAACAACAACCAATCTAGTGAACTATTGCATTTTGGTGGTGCAAGGAGTGAACAATTCAGCCACATTCTATCACCATCCTTTAGACCTTCACACCAAACCCTGCAAAACCCTTCATTATTCTTCATGCCAGAATCAAACCAAAACCAAAATTACCAACACCCCCACCAAGGGTTGGTGGTGTCAAACAAACCATTCCAGGGGCTAATACCAATGTCTGAACTTAACAACAACAATAACAGTAACAGCTTAAACAATTCCCCTTCTGGAGCCAACCTCTTCAACCTTCTCCATTTCAATAATGAAGGGTCCAATAACTTCTTCTCTGAAGGTTGTTGTTCTATAATGGGTGATCATCAAACAAGCTCCACCATTGCCCCTCCTCACATGTCAGCAACTGCACTGCTTCATAAAGCTGCTCAAATGGGTGCAACTTCCAGTAACAACAACAACAGTGCCTCCTTATTGCTCAGAAGCTTAGGAAACAGCACCACTTCAAGTTCCTCCAAATCACTTGTTACAACTCCAAACTATGGCAACCCTAACATGCAAGACCTTATGAACTCTTTTGCTGCTGGTGGAAACTCTTCTTCCTTTTTCGAAAGTGTGTCTTCTTCTTCTGCAGCTGGGCTTCCTGGGTTTGAAGCATATGAACATCATGGCATAAAGGAAGAACCAAGAGTGCAGAAAATGAGTATTGGAGGCTCTGAAAGGCTCACAAGGGACTTTCTAGGAGTTGGTCAAATAGTGAGAAGCATGAGTGGAGGAGTTTCACTGAAAGAACAACAACAACAACTTCAGCAACAGCATCAGCAACGTAGCTTCAACTTGAGATCTTTGGAAGAAGAGAAAAACGCTGCGCCGTCAGGTCAATCTTTTGGAAGTGGAGGGAACTTTCAGTGA 1629 0.4414 MAASFSAASFLGIREEDQNQMKQQQNSSTPSSSTTPAAPPPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQENARPPTPNLSSAISSQLYGNSNMSLGLSQIASQISSIQNQNNNQSSELLHFGGARSEQFSHILSPSFRPSHQTLQNPSLFFMPESNQNQNYQHPHQGLVVSNKPFQGLIPMSELNNNNNSNSLNNSPSGANLFNLLHFNNEGSNNFFSEGCCSIMGDHQTSSTIAPPHMSATALLHKAAQMGATSSNNNNSASLLLRSLGNSTTSSSSKSLVTTPNYGNPNMQDLMNSFAAGGNSSSFFESVSSSSAAGLPGFEAYEHHGIKEEPRVQKMSIGGSERLTRDFLGVGQIVRSMSGGVSLKEQQQQLQQQHQQRSFNLRSLEEEKNAAPSGQSFGSGGNFQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00317 542 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Rops1g00317 542 MobiDBLite consensus disorder prediction 502 517 - -
Rops1g00317 542 SMART c2h2final6 73 95 IPR013087 -
Rops1g00317 542 SMART c2h2final6 149 169 IPR013087 -
Rops1g00317 542 SMART c2h2final6 114 144 IPR013087 -
Rops1g00317 542 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Rops1g00317 542 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Rops1g00317 542 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 511 IPR031140 -
Rops1g00317 542 MobiDBLite consensus disorder prediction 34 48 - -
Rops1g00317 542 FunFam protein indeterminate-domain 12-like 52 120 - -
Rops1g00317 542 Gene3D Classic Zinc Finger 127 205 - -
Rops1g00317 542 MobiDBLite consensus disorder prediction 502 542 - -
Rops1g00317 542 MobiDBLite consensus disorder prediction 16 33 - -
Rops1g00317 542 MobiDBLite consensus disorder prediction 1 58 - -
Rops1g00317 542 Coils Coil 505 525 - -
Rops1g00317 542 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Rops1g00317 542 MobiDBLite consensus disorder prediction 527 542 - -
Rops1g00317 542 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Rops1g00317 542 Gene3D Classic Zinc Finger 52 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00317 Rops-Chr1 8425725 8433095 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00317 44 492 IDZ Gene Family AT5G66730 44.885 2.02e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g00317 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00317 K25870 - gmx:100807789 542.347