Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00316 ATGGGTAGTTGTGGAAGAGAAGGTGTAGTGAGGCAATATATAAGATCAAAGGTTCCTCGTTTAAGATGGACCCCCGAACTGCATCGTTGCTTTGTTTATGCCATTGAGACTCTTGGAGGTCATCAAAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATTTCACATGTCAAGAGCCATTTGCAGATGTACAGAAGCATGAGAGGTGACTCGTGTAGACAAGATAGGACTTCCACCCAACATAGAAAACAATCTTTTCAGGAGCATGATGATGGGTGTGTTGATGATGGGAATGATGTTGGTGACCACTCTTGTTTAAAACCCATTGGAAAAGAATCTGATTCCCTCTTCAGATATAGTAATTTCTCCCCAAAAAGAGCCAGAATCGAGAAGACTAGGTCCCTCTCAGGAATCCTACAAAGCAGCCAAAGAATAAGTGAAGCAGTTCCAAATCCACACACTACTTTCTATGATTATCTGCAGGCCATGATTCAGCAGAAGGGAATAAAGGAGATTTGTGTTGGTTCAATATGGGAGACCCAACCCCATTCTGAAATCTTTCCTTTGCTACCAAAGCAAGAAACTGATTTGCTCCAGGTTGCCAAGTTAAATGACAAACAACCTTTGAATGAACTTGGAAACACAAGGAGGGTATATGCTGAAAATGAAGATATAGGAGGTTGTGAGTTGTCATTGTCAATCTCATTGCCCCATCCTTCCTCTCAGAGAAGTAATGCTTCTTCATCCAATGAGATCAGAGGGTCAGGATATAGCAACTACATGGGCTGCTCCAATTCTTCCACTGTCCAAAATAGAATTAACTTAGATCTATCTTTAACCATTTGA 864 0.4132 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDSCRQDRTSTQHRKQSFQEHDDGCVDDGNDVGDHSCLKPIGKESDSLFRYSNFSPKRARIEKTRSLSGILQSSQRISEAVPNPHTTFYDYLQAMIQQKGIKEICVGSIWETQPHSEIFPLLPKQETDLLQVAKLNDKQPLNELGNTRRVYAENEDIGGCELSLSISLPHPSSQRSNASSSNEIRGSGYSNYMGCSNSSTVQNRINLDLSLTI* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00316 287 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 15 127 IPR044847 GO:0000976|GO:0006355|GO:0010158
Rops1g00316 287 MobiDBLite consensus disorder prediction 75 101 - -
Rops1g00316 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Rops1g00316 287 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Rops1g00316 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Rops1g00316 287 MobiDBLite consensus disorder prediction 74 101 - -
Rops1g00316 287 FunFam Myb family transcription factor 17 75 - -
Rops1g00316 287 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Rops1g00316 287 Gene3D - 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00316 Rops-Chr1 8364756 8368632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00316 1 74 G2-like Transcription Factor Family AT1G14600 72.152 2.47e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops1g00316 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00316 - - gmx:100810994 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00316 1 8364756 8368632 Rops1g00316 1 8364756 8368632 ECH