Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00310 ATGGAAAAGGTTGCTCCTCCTCTTCTTCCACCTATGTCGGTGCACCACCACCCGGGTAGTTTATTCTACGATCCACCCTTGATGAATAGCAACAAGAAGCGCGATCTGTCATCATACGACGTCGTTTTGCCGAACGAGAATTGGAACTCGAAGGAATGGAACTGGGACAGTGTAAGATTCGTGGCGAAACCTTCAAATAACAGAGACTCAGGAGAAGGAGAGGGTTTAAAATTGAATCTCGGTGGTGGTGGTGTGAACAATAATAGGGGAAATAAGAGGGTGCGTTCGGGGTCACCTGGAACGGCGTCGTATCCGATGTGTCAGGTGGATAACTGTGGTGAAGATCTATCGAAGGCGAAGGATTATCATCGAAGGCATAAAGTGTGTGAAGCTCATAGTAAGGCTTCGAAGGCGCTTGTGGCGAATCAAATGCAAAGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTCTTTCGGAATTTGATGAAGGGAAGCGGAGTTGTCGTCGTAGACTCGCCGGACATAACAGGAGACGGAGGAAGACTCAGCCGGAGGATGTTACATCGCCGGCCCCAACCGCCGCCGCCGCCAATTTGGAAATTTTCAACTTGTTGACTGCAGCAATAGCTGGAGGAGGTTCGCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGACAGAGAGCAGCTTGTTCAGATTCTTAATAGGATACCTTTGCCTGCTGATCTCACAGCAAAGTTGCTGGATGTTGGTAATCTCAATGGGAAAAAAGATCATGTGCAAATGCAAACATCACCCTCCTATCATCATCATCATGATGAACAACTGAACCACACCCCCTCTGCCCCATTAACTAAGGACTTGCTTGCTGTTCTTTCCACCACTCTATCCACATCTACTCCCAATCCCATTGCCTTAGTCTCTCAAAATGGCAGCAATGGCGGTGTTGACAATTCTAGGACTGATGTTGACCAGACAAGAGCACAACAATTCACTCCTGTTGGTGGAGAAAGAAGCAGTGGCAGTGGCAGTTCTTCTCAGTCTCCGTTTGAAGATTCTGATTGCCAGGAGGATGTTCGAGTTAATTTACCTCTACAACTTTTTAGTTCCTCTCCGGAAGATGACAGCCTGCCAAAAATGGCTTCTTCGCGGAAGTATTTCTCGTCAGACAGTAGTAATCCTGTGGAAGAGAGGTCACCGTCGTCATCTCCTACCGTTTTGGAGATGCAGTTTGGTTTGCAGGGTGGGGATAGAGGTCTCAAGCCCGAGAACATTTCAACAGGAAGAGGAGTCGATGTGAATAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTTGATCTCTTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTCACGTCAAAGTGTTCAATTTCAAGCTGGGTATACTACATCTTCGGGTTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCAGGAGCCTTGAGAACACAGATTTACAACTGGCTTTCTAATAGGCCATCAGACTTGGAAAGCCACATAAGGCCTGGCTGTGTGGTCCTAACAATTTATGCTTCAATGTCTTCTGCTGCCTGGGAACAACTAGAAGAAAACTTCCTCCAACATATTCATTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAATGGAAGATTTCTAGTTCATTCTGGCAGTCAGTTAGCAATGCACAAAGATGGAAATATACGCTTGTGCAAACCATGGAGAACATGGAGGTCTCCAGAGTTGATATCTGTGTCTCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATTCATTGCACAGGTGCTGGCTGTTACACATCAGCAGAAGTTATGGGATCTGCACATCCTGGTATGGCCTATGATGAGATAAAATTGGGTGGTTTTAAAGTTCAGGATGCATCTCCTGGTGTTCTGGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGTAACAGTTTTCCGGTGATAATAGCCGATGCAACCATTTGCAGAGAATTGAGACCACTTGAGTCTGAATTTGACGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAATCTCGTTTTGGGAGGCCCAGGTCAAGGGAGGAGGCTTTGCACTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGACTAAGGTTCTCGATTGTGAATGAGGTTTCAGATTATTCACTGGACAGGTTCAAATTTGTAATCACGTTTGCAGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATATGCTGGTTGATAAACACTTGGAAGGGGAATGGTTGTCAACAGTGTCAATGGAGATGCTGAATGCAACCCAACTCCTAAATAGAGCAGTGAAAGGAAAGTACTTGAGCATGGTTGATTTGCTCATCCACTATTCTATACCTAGCAAAAATGGTACATCAAGGAAATATGTATTTCCACCGAATCTAGAGGCCCCTGGTGGTATTACACCCTTGCACTTGGCAGCTTGTACATCATTTTCCGAGGGTGTAATTGACTCTTTAACGAATGACCCACAGGAGATTGGATTGAAATGCTGGGAATCCCTTGTGGATGCAAATGGGCAGACTCCGCATGCTTATGCCATGATGAGGAATAATCACTCTTATAATGTGCTGGTTGCCCGTAAACTTGCTGATAGACAAAGAGGTGAAGTTTCAGTCAGAATTGACAATGAGATAGAGCAATCGTCATTGAGAGTTGAGCCTATGAAAAAGCACAGTATGCAAGTCAAACGAGGTGAGAATTCTTGTGCTAAGTGTGCCATTGCAGAAATTCGCTCCAGAAGAGTTTCAGGTTCACGGGTCATGTTTCACCGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGAACCCCTTTTGTAGGCTCAGTTGCTCCCTTCAGGTGGGAAAATTTGGATTTTGGCACAATGTAA 3081 0.4456 MEKVAPPLLPPMSVHHHPGSLFYDPPLMNSNKKRDLSSYDVVLPNENWNSKEWNWDSVRFVAKPSNNRDSGEGEGLKLNLGGGGVNNNRGNKRVRSGSPGTASYPMCQVDNCGEDLSKAKDYHRRHKVCEAHSKASKALVANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSPAPTAAAANLEIFNLLTAAIAGGGSQGKFEERRSQVPDREQLVQILNRIPLPADLTAKLLDVGNLNGKKDHVQMQTSPSYHHHHDEQLNHTPSAPLTKDLLAVLSTTLSTSTPNPIALVSQNGSNGGVDNSRTDVDQTRAQQFTPVGGERSSGSGSSSQSPFEDSDCQEDVRVNLPLQLFSSSPEDDSLPKMASSRKYFSSDSSNPVEERSPSSSPTVLEMQFGLQGGDRGLKPENISTGRGVDVNKEASQSHSCNISLDLFKGSNNRIQQPSSRQSVQFQAGYTTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGALRTQIYNWLSNRPSDLESHIRPGCVVLTIYASMSSAAWEQLEENFLQHIHSLIQNSDSDFWRNGRFLVHSGSQLAMHKDGNIRLCKPWRTWRSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGAGCYTSAEVMGSAHPGMAYDEIKLGGFKVQDASPGVLGRCFIEVENGFKGNSFPVIIADATICRELRPLESEFDEEEKICDAISEEHESRFGRPRSREEALHFLNELGWLFQRLRFSIVNEVSDYSLDRFKFVITFAVERNCCMLVKTLLDMLVDKHLEGEWLSTVSMEMLNATQLLNRAVKGKYLSMVDLLIHYSIPSKNGTSRKYVFPPNLEAPGGITPLHLAACTSFSEGVIDSLTNDPQEIGLKCWESLVDANGQTPHAYAMMRNNHSYNVLVARKLADRQRGEVSVRIDNEIEQSSLRVEPMKKHSMQVKRGENSCAKCAIAEIRSRRVSGSRVMFHRPFIHSMLAVAAVCVCVCVFFRGTPFVGSVAPFRWENLDFGTM* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00310 1026 MobiDBLite consensus disorder prediction 299 352 - -
Rops1g00310 1026 ProSiteProfiles Zinc finger SBP-type profile. 104 181 IPR004333 GO:0003677
Rops1g00310 1026 MobiDBLite consensus disorder prediction 171 191 - -
Rops1g00310 1026 Gene3D - 772 956 IPR036770 -
Rops1g00310 1026 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 801 IPR044817 GO:0003677
Rops1g00310 1026 MobiDBLite consensus disorder prediction 454 489 - -
Rops1g00310 1026 MobiDBLite consensus disorder prediction 257 281 - -
Rops1g00310 1026 MobiDBLite consensus disorder prediction 65 100 - -
Rops1g00310 1026 SUPERFAMILY Ankyrin repeat 775 919 IPR036770 -
Rops1g00310 1026 MobiDBLite consensus disorder prediction 367 409 - -
Rops1g00310 1026 SUPERFAMILY SBT domain 105 185 IPR036893 GO:0003677|GO:0005634
Rops1g00310 1026 MobiDBLite consensus disorder prediction 84 100 - -
Rops1g00310 1026 Pfam SBP domain 107 180 IPR004333 GO:0003677
Rops1g00310 1026 FunFam Squamosa promoter-binding-like protein 14 98 168 - -
Rops1g00310 1026 Gene3D - 97 168 IPR036893 GO:0003677|GO:0005634
Rops1g00310 1026 MobiDBLite consensus disorder prediction 367 438 - -
Rops1g00310 1026 MobiDBLite consensus disorder prediction 299 355 - -
Rops1g00310 1026 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00310 Rops-Chr1 8252639 8258597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00310 1 1026 SBP-box Gene Family AT1G20980 51.811 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops1g00310 SBP 3.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00310 - - gmx:100819004 1527.69