LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g00304	ATGGAACAAGACTCGAGTGGCCATAGTGGAGCGGCCAGGGAGCACACTTGTCGGACAACTTGGGGGAGGCTGACCCGCCAGGGGTCAGAATTCGGTAACGTGCAGTTGGATACTGCTAAACTTGCAAACACAATGGAAACTGCTGCTGAGGCTCAAGATGCTAAAGACTACAAAGAGCCACCTTCAGCACCTCTCTTTGAACCTGGAGAGTTATCATCGTGGTCTTTCTACAGAGCAGGGATAGTAGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACAGTGTTAACAATGATGGGTGTGGCCAAATCCAACAGCAAGTGTTCCACAGTAGGTGTCCATGGCATAGCTTGGGCCTTTGGTGAAATGATCTTCGCTCTTGTCTATTGCACTGCTGGCATCTCAGGGAGTCACATTAACCCAGCAGTGACGTTTGGGTTGTTCTTGGCACGCAAGCTCTCTCTGACTAGGGCAGTGTTTTACATAATTATGCAATGCTTGGGAGCTATCTGTGGTGCTTGGGTTGTTATGGGGTTCCAACCACACCCGTATGAGAGGCTTGGTGGTGGTGCCAACACTCTCAATAATGGATACTCTAAAGGTGCTGGCCGTGGAGCAGAGATAGTGGGCACGTTTGTGCTTGTACATACTGTCTTCTCTGCTACTGATGCCAAGCGAAATGCTAGAGACTCCCACGTTCCTATTTTTGGCACCACTTTCAATCGGTTTTGCCGTTTTTCTGGTGCATTTGGCTACTATTCCTATCACTGGGACTGGTATCAACCCAGCTAG	792	0.4899	MEQDSSGHSGAAREHTCRTTWGRLTRQGSEFGNVQLDTAKLANTMETAAEAQDAKDYKEPPSAPLFEPGELSSWSFYRAGIVEFVATFLFLYITVLTMMGVAKSNSKCSTVGVHGIAWAFGEMIFALVYCTAGISGSHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAWVVMGFQPHPYERLGGGANTLNNGYSKGAGRGAEIVGTFVLVHTVFSATDAKRNARDSHVPIFGTTFNRFCRFSGAFGYYSYHWDWYQPS*	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g00304	263	PRINTS	Major intrinsic protein family signature	157	176	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops1g00304	263	PRINTS	Major intrinsic protein family signature	78	97	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops1g00304	263	PRINTS	Major intrinsic protein family signature	120	144	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops1g00304	263	PRINTS	Major intrinsic protein family signature	206	224	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops1g00304	263	Pfam	Major intrinsic protein	70	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Rops1g00304	263	SUPERFAMILY	Aquaporin-like	71	242	IPR023271	-
	Rops1g00304	263	Gene3D	Glycerol uptake facilitator protein.	63	255	IPR023271	-
	Rops1g00304	263	ProSitePatterns	MIP family signature.	138	146	IPR022357	-
	Rops1g00304	263	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	46	236	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g00304	Rops-Chr1	8178830	8179738	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g00304	47	244	Major Intrinsic Protein MIP	AT4G00430	77.273	3.28e-111	318

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g00304	K09872		-	cave:132192212	334.724