Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00278 ATGCCACGAGCTAGGAGAAACGTTGATCCTACGGTTTTGGCCACTATGCAACAATTGGTCGAAACTGTCCAGCAATTGAGTGCACAAGTATCTGAGTTGAGGGAGAATCGAGACAGAGGTGACCGGAGCAATGCAGTTGAAGAGGAGGGTTCACCCCTTGCTGAGCATTTGACACAGGTTCCAAAGCCTGAAAACTTTAAGGTCCCAACAATGAAGGAGTATGATGGCACTACTGACCCCCAACAACATATCAGAATGTATAAAACAAAGATGTCAATTTTGGGAGTTTCAGACGCCATATTATGTAAAGTATTTCCAGATACTTTGGCGGGGACTGCTTTGACTTGGTTCGTGAATCTTCCAGCCTATTCTGTAACAAGTTTTACGGACTTGGCGAAACAGTTTACAGCCCAGTTTACAGCTAGCAAAATTCAGAGGAAAAGGTCTGCAATCCTTTTCAGTATACAACAGCAATCAGGCGAGTCATTAAAGGAGTTTTTATGGAGGTTCAATGAGGCGACAGTTCAGGTGAAAGATCTAAATTCAGAGGTCTGTATTTCAGCTTTCGAGAATGGACTACGGAGGGGTCCTTTTTCTGATGATCTGATACAGAATCCGGCGAAAAATATGGAAGAAATAAGGGTGAGAGCGGATAAATTCATCAAGACAGAAGAAGTCAATGAGGTTAAGCGAAGGCGAGAGGAGTTACAAGACAAAAAACAGGGTGGTGGTAGTTATCAGGAGGTAAGGAGTTTTAATCGGGGTAATGGAGGTATTCGATACAACCATGTTGTGGCAGCTGGGAAGCAAGAGATCAGGGGGAATGCATGTGCATGTGGGTTCATGATAGGTGCAGTGATGGCTGGCATGGAAGCTCCCCTCTTTGCCCTAGGAATCACCCACGTTTTGACTGCATTTTGCTCTCCTCATGAGGACACCTCAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCACCATTATTGGCGAAGTTTGGAGCTTTCCCTGAGGCTGTCATAAGAACTTACACGAAGCAGTTACGGCTTGGACTTGAGTACTTGCACAAAAGTGGAATCATGCACAGAGATATTAAGGGAGCCAATATGCTTGTAGATAATAAAGGGTGCATAAAACTTACAGATTTTGAGGCATCCAATTCATCAACAGAACTCCCAGACTGCAGTGCAAACTAA 1197 0.4411 MPRARRNVDPTVLATMQQLVETVQQLSAQVSELRENRDRGDRSNAVEEEGSPLAEHLTQVPKPENFKVPTMKEYDGTTDPQQHIRMYKTKMSILGVSDAILCKVFPDTLAGTALTWFVNLPAYSVTSFTDLAKQFTAQFTASKIQRKRSAILFSIQQQSGESLKEFLWRFNEATVQVKDLNSEVCISAFENGLRRGPFSDDLIQNPAKNMEEIRVRADKFIKTEEVNEVKRRREELQDKKQGGGSYQEVRSFNRGNGGIRYNHVVAAGKQEIRGNACACGFMIGAVMAGMEAPLFALGITHVLTAFCSPHEDTSNILLEFVPGGSISPLLAKFGAFPEAVIRTYTKQLRLGLEYLHKSGIMHRDIKGANMLVDNKGCIKLTDFEASNSSTELPDCSAN* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00278 398 Gene3D Transferase(Phosphotransferase) domain 1 294 396 - -
Rops1g00278 398 SMART serkin_6 246 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00278 398 SUPERFAMILY Protein kinase-like (PK-like) 305 383 IPR011009 -
Rops1g00278 398 Coils Coil 16 36 - -
Rops1g00278 398 MobiDBLite consensus disorder prediction 31 53 - -
Rops1g00278 398 Pfam Protein kinase domain 311 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00278 398 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 310 393 - -
Rops1g00278 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
Rops1g00278 398 ProSiteProfiles Protein kinase domain profile. 235 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00278 398 Coils Coil 219 239 - -
Rops1g00278 398 Pfam Retrotransposon gag protein 104 194 IPR005162 -
Rops1g00278 398 MobiDBLite consensus disorder prediction 32 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00278 Rops-Chr1 7542570 7559657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00278 311 392 MAP Kinase Kinase Kinase AT1G09000 76.829 6.10e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops1g00278 Pkinase 2.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00278 K20606 - mtr:112419421 179.874