Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00260 ATGGCATCTTCAGACACATCTTCTAGCATTAAGGAGGAGCTTCCACTGAAACCAATCCCAGGTAGTTATGGCCTTCCATTCTTTGGAGCCATTAGTGACAGACACGACTATTTCTACCACCAAGGTAGAGACAAGTTCTTCACCACCAAGATCCAAAAATACAACTCCACAGTCTTCAGAACCAACATGCCACCAGGTCCCTTTATCTCTTCTGATCCAAGAGTCATAGCTCTTGTGGATGGTGTCTCCTTCCCTATCCTCTTTGATATCAAGAAGGTCGAGAAACTTAACGTCCTTGACGGCACTTTCATGCCCTCCACTAAATTCACCGGCGGCTACCGTGTCTGTGCATACCTCGACACGACTGAACCAAACCATGCCGTCATTAAAGGCTTCTTCCTCAAGACTCTTCTCTCTCGGAAAGACTCATTTGTCCCTCTCTTCCGCACCACCCTTTCGGAATCCTTCACCGAGATAGAGGACCAGTTGTCTGGAAAAACCGGCGAGGCCGATTTCAACGCTGTGTTTTCTGATGCGTCCTTCAACTTCATGTTCCGCCTCCTCTCTGATAACAACAAGCACCCGTCGGAGACCAAGCTTGGTTCACAAGGGCCCAAACTGTTTGATACGTGGCTCCTCTTTCAGCTCGCGCCACTCGCGACTTTGGGTCCTCCCAAGATCTTCAACTACGTAGAGGACTTCTTGCTACGCACGATTCCCTTCCCGGCATGTTTCACCAGGTCAAGCTACAAGAAACTCTACGAGGCATTCTCCGGCTCGGCCGGGACAGTACTGGATGAGGCAGAGAAGGATGGGATAAAGAGAAGCGAAGCATGCCACAACCTCATTTTCATGGCAGGTTTCAACGCCTACGGTGGCTTGAAGAACCAGTTCCCGGTACTGATGAAATGGGTTGGCTTGGGAGGTGAGGAACTACACAAAGAGCTAGCAAGTGAAATAAGAAGTGTTATAAAAGAGGAAGGTGGAATCACCATTGGTGCATTAGAAAAGATGAGTTTATTAAAATCAGTGGTTTATGAAGTTATGAGAATTGAGCCTGTGGTGCCTTACCAATACGCAAGGGCGAGGGAGGATTTGATAGTGAAAAGCCACGACGCTGCGTTTGAGATAAAGAAGGGTGAGATGATATTTGGGTACCAACCTTTTGCGACAAAGGATCCTAGGATTTTCGAGAATGCTGAGGAATTTGTGGCACGAAGGTTTGTTGGGGAAGGTGAGAAGATGTTGAAGCACGTACTTTGGTCAAATGGGAGAGAAACTGAAGAACCATCGGTGGATAATAAACAATGTCCAGGGAAGAATCTGGTGGTCCTTCTTTGCAGGTTGTTGTTGGTGGAGTTCTTCTTGCGTTATGACACGTTTCAGTTTGAGTATAAAACTAATGCTTTTGGTTCTGATGTTACCATCAAGTCTCTCACCAAGGCCTCCATCTTCTGA 1458 0.4712 MASSDTSSSIKEELPLKPIPGSYGLPFFGAISDRHDYFYHQGRDKFFTTKIQKYNSTVFRTNMPPGPFISSDPRVIALVDGVSFPILFDIKKVEKLNVLDGTFMPSTKFTGGYRVCAYLDTTEPNHAVIKGFFLKTLLSRKDSFVPLFRTTLSESFTEIEDQLSGKTGEADFNAVFSDASFNFMFRLLSDNNKHPSETKLGSQGPKLFDTWLLFQLAPLATLGPPKIFNYVEDFLLRTIPFPACFTRSSYKKLYEAFSGSAGTVLDEAEKDGIKRSEACHNLIFMAGFNAYGGLKNQFPVLMKWVGLGGEELHKELASEIRSVIKEEGGITIGALEKMSLLKSVVYEVMRIEPVVPYQYARAREDLIVKSHDAAFEIKKGEMIFGYQPFATKDPRIFENAEEFVARRFVGEGEKMLKHVLWSNGRETEEPSVDNKQCPGKNLVVLLCRLLLVEFFLRYDTFQFEYKTNAFGSDVTIKSLTKASIF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00260 485 CDD CYP74 49 477 - -
Rops1g00260 485 FunFam Allene oxide synthase, chloroplastic 14 484 - -
Rops1g00260 485 PRINTS E-class P450 group IV signature 375 389 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00260 485 PRINTS E-class P450 group IV signature 391 409 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00260 485 PRINTS E-class P450 group IV signature 338 354 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00260 485 PRINTS E-class P450 group IV signature 437 455 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00260 485 PANTHER CYTOCHROME P450 26 14 460 - -
Rops1g00260 485 Gene3D Cytochrome P450 10 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00260 485 Pfam Cytochrome P450 311 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00260 485 SUPERFAMILY Cytochrome P450 15 460 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00260 Rops-Chr1 7170899 7174273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00260 12 483 Cytochrome P450 AT5G42650 52.321 3.38e-176 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00260 K01723 - gmx:100801764 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00260 1 7170899 7174273 Rops1g00260 1 7170899 7174273 ECH