Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00253 ATGCCACGCCCTTGTTTTCAAAAGCTTATTTTACCAACAACCATTCAATCCAGGCAATTGAGGATTCCAGACAATTTTCTGAGGAAATATGGGGGTCAGCTTTCGGCAATTGCTACCCTCACTGTTCCTGATGGTAGTGTTTGGCGTGTAGGATTAAAAAAGGCAGACAACAGAATTTGGATCCTTGAGGGTTGGCAAGAATTTGTTCAACGCTACTCCATTGGCGTTGGGTACTTCTTAGTATTCATGTATGAAGGGAATTCATCTTTTATTGTACATATTTTTAATATGAGTACCTCTGAGGTAAATTATCAATCAGCCTTGAGAAGCCGTAATGAAGGGCATTGCTATGCAAATTATCATCATATTTTTGATGAAATGGAAGATGTAGACTCCTTTGAATTCTTCGATTCGTCACCTTCAAGCCTTACTTCTGGTGCACTGCAAAACAAGGTTTTTGCGGGATCTGTAGATCAACTGACACCTGGGAAGAGTCAAACTCCAGCATTGCAGAATTTGTTTAACGGTGGATCTAAACTCAATCGCGTAAACTGGGGAGATAGTGGGGGTGCTTTTTCTACGAAGGACAATCAGTCAACCAGAGATATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTTCGTTTTTCTAACGAGGAAGGGGTTAATAAAACTGTAAGAAAGAAGCGGAAATCAGATCCCAATGGTCAGGAACCCTCTGGGGAAAATGAAGAGGAGGTAGAAATGCGGTATAGATTTTATGAAAGTGCATCTGCAAGAAAAAGAACCGTGACAGCGGAAGAAAGAGAAAGGGCAATTAATGCATCGAAAGCATTTGAACCAGTTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTACTTATATAGGGGATGCATAATGTATTTGCCTTCCTGCTTTGCAGAAAAGAACTTGAATGGGGTTTCAGGATTCATTAAACTTCAGATCACGGATGGGAGACAGTGGCCAGTTCGCTGCCTTTACAGAGGAGGTCGAGCAAAGTTAAGCCAAGGTTGGTTTGAATTTACATTAGAGAACAATTTAGGTGAAGGTGATGTCTGTGTCTTTGAGTTGCTTAGAACAAAGGATGTAGTGCTGCAAGTTACTACATTTCGGGTAGTGGAGGATGTGGGGTTGTTGAACCCTCCTATGCAGCAGAGCCATAATATGAGCCATTCTAAACTGTTGAACCCTCACCTGCAGCATCGCATTAGTACAACCAAATTGGTTAGAAATTAG 1281 0.413 MPRPCFQKLILPTTIQSRQLRIPDNFLRKYGGQLSAIATLTVPDGSVWRVGLKKADNRIWILEGWQEFVQRYSIGVGYFLVFMYEGNSSFIVHIFNMSTSEVNYQSALRSRNEGHCYANYHHIFDEMEDVDSFEFFDSSPSSLTSGALQNKVFAGSVDQLTPGKSQTPALQNLFNGGSKLNRVNWGDSGGAFSTKDNQSTRDIGVQFNAVEFKRSTEELKFRFSNEEGVNKTVRKKRKSDPNGQEPSGENEEEVEMRYRFYESASARKRTVTAEERERAINASKAFEPVNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQITDGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRTKDVVLQVTTFRVVEDVGLLNPPMQQSHNMSHSKLLNPHLQHRISTTKLVRN* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00253 426 CDD B3_DNA 4 96 IPR003340 GO:0003677
Rops1g00253 426 Gene3D - 270 391 IPR015300 -
Rops1g00253 426 CDD B3_DNA 291 386 IPR003340 GO:0003677
Rops1g00253 426 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Rops1g00253 426 Pfam B3 DNA binding domain 296 386 IPR003340 GO:0003677
Rops1g00253 426 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Rops1g00253 426 SUPERFAMILY DNA-binding pseudobarrel domain 287 386 IPR015300 -
Rops1g00253 426 ProSiteProfiles B3 DNA-binding domain profile. 293 388 IPR003340 GO:0003677
Rops1g00253 426 PANTHER B3 DOMAIN-CONTAINING 3 376 - -
Rops1g00253 426 MobiDBLite consensus disorder prediction 230 254 - -
Rops1g00253 426 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Rops1g00253 426 SMART B3_2 6 98 IPR003340 GO:0003677
Rops1g00253 426 SMART B3_2 293 388 IPR003340 GO:0003677
Rops1g00253 426 Gene3D - 1 99 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00253 Rops-Chr1 7082037 7085679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00253 1 392 B3 DNA Binding Superfamily AT3G18990 52.261 1.56e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g00253 B3 7e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00253 1 7082037 7085679 Rops1g00253 1 7082037 7085679 ECH