Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00249 ATGGCTCACCATTGTTCTAACAAGGCCTTAGGTTGCTTTCTCATATTCTCTCTTTTTGTGTCTTCTTTTTCAACCTTTTCTTATGCTCATATTGAAGGATTTTTCCATTGGGATCCAAGAGAAGAAATAATATTTGGTGATACTTCTCCACCAGAAATATTCCCAGAAATAGGTGGTGTTTTTCCCCCAGAAACATCCCCAGAAATTAGTGGTGCTCTTCCACCAGAAAATGAAATTGAAAATGATAACATAATTTTTCCCAATGAAAGGCTAAAAAATGCCTATATTGCTCTTCAAGCATGGAAAGAGGCTATCTATTCTGACCCTTTGAATACAATTGATAATTGGGTTGGTGGTGATGTTTGCTCCTACAATGGTGTGTTTTGTGCTTCTGCTCTTGATGACCCCAAATTGACTGTGGTTGCTGGTGTTGATCTTAACCATGCAGACATTGCTGGGCACCTCCCAGAAGAGTTAGGTCTCTTGAAAGATATTGCACTTTTCCACATTAACTCCAACAGATTTTGTGGAATTGTCCCAGATAGCTTTGAGAATCTTACTCTTTTATATGAGTTTGATATCAGCAATAATCGCTTTGTTGGTGATTTTCCTTCTGTTGTCCTCAAAATGCCAAACTTGAAGTACTTGGATATCAGATTCAATGACTTTGAAGGAGTTTTGCCTTCACAACTATTTGAGAAAGAACTTGATGCAATATTTTTGAACAACAACCGTTTCACATCTGTTATCCCAGAAACTCTAGGAAAATCCAAGGCTTCTGTTGTGACCTTTGCCAACAATAATTTCACAGGTTGCATTCCAAAATCCATAGGGAACATGATGAATTTGAATGAGGTTGTCTTCTTGGGCAATGACCTTGGAGGTTGCTTTCCACAAGAGATTGGATTGTTAGGAAATGTGACTGTTTTTGATGCTAGTGATAATGGGTTTATAGGGACTCTTCCTAACTTGTCAGGATTGAAGAATGTGGAGGTCATAGACATAGCACACAACAAGTTTAGTGGATATGTGTCTAACACTATTTGTCAGCTACCTTTATTGAAGAACTTCACATTCTCTGACAACTATTTCAATGGGGAAGCTCAAACTTGTATGCCTTCTTCCAATTCAGGTGTTGCTTTTGATGACTCAAGCAATTGTTTGTCAGGAAGGAAGAATCAAAAGACATCCAAGCAATGCTTACCAGTGCTAACTCGCCCTGTGGATTGTAGCAAGCAATGTGGTGGAGGTAGTGGTAATGACCATGGTAGCAGCCATGTTCCCTCAACACCAAAGCCAACTCCATCACCTTCCCCTCTGATAGAACCACCAAAGCCCAACCCACCTAAGGTAGAAACACCAAAGGTTGAGCCACCTCCAACCCCAAAACCTCAACCACCACCAACACCAAAGGTTGAGCCACCTCCAACCCCTAAAACTCAACCCCCTCCAACACCAAAGGCTGAGCCACCTCCAACCCCAAAACCTCAACCACCACCAACACCAAAGGCTGAGCCACCTCCAACCCCTAAAACTCAACCCCCTCCAACACCAAAGGCTGAGCCACCTCCAACCCCTAAAACTCAACCCCCTCTAACACCAAAGACTGAGCCACCACCAGCTCCAAAACCTCAACCACCACCAACTCCAAAGACCGAGCCACAACCAGCTCCAAAAGCTCAACCACCTCCAACTCCAAAGACCGAGCCATCACCAACACCAAAGGCTGAGCCACCTCCAACCCCAAAAGCTCAACCCCCTCCAACACCAAAGGCTGAGCCACCTCCAACCCCTAAAACTCAACCCCCTCCTACACCAAAGGCTGAGCCACCTCAACTACCACCAACACCAAAGGTCGAGCCACCTCCAACACCAACGGCTAAACCACCGTCAACCCCAAAAGCTAAACCACCACCAACACCAAAGGCTGAGCCTCCTTCAACACCTAAAGTTGAGCCACCTCCAACCCCAAAATCTCAACCACCACCAACCCCAAAGGCTAAGTCACCACCAACACCAAAGGTTGAGCCACCACAAACCCCAAAGGTTGAGCCACCACCAACACTTCCACCTGTAGAAGATATCCCACCATCAAGGACACCAGTGTCATCACCACCTCCCCCTGTCCACTCACCACCACCTCCAGTCCACTCTCCTCAACCCCCAATGTCCTCACCACCTCCACCTGTTCACTCTCCACCACCACCAGTGCAATCTCCACCTCCACCTGTTCACTCTCCTCCACCCCCTGTCCACTCTCCACCACCACCAGTGCACTCTCCACCTCCACCTACCCACTCTCCCCCACCCCCTGTCCACTCCCCACCTCCACCTGTTCACTCTCCACCACCACCAACACACTCTCCCCCTCCACCAGTCCATTCTCCACCACCTCCACCAATGCACTCTCCACCACCCCCAGTCCATTCTCCTCCTCCACCAGTTTACTCTCCACCACCACCAGTCCATTCTCCACCACCTCCACCAGTGCACTCTCCACCACCCCCAGTCCATTCTCCTCCTCCACCAGTTTACTCTCCACCACCACCAGTCCACTCCCCACCACCCCCAATTTTCTCTCCTCCTCCCCCAGTCCACTCCCCACCACCACCTCAATGGGAAGACATCACCCTCCCACCTTTCTTTGGATCTGAATACAAGTCACCTCCTCCACCAACAATTGCTGGATACTAA 2694 0.4781 MAHHCSNKALGCFLIFSLFVSSFSTFSYAHIEGFFHWDPREEIIFGDTSPPEIFPEIGGVFPPETSPEISGALPPENEIENDNIIFPNERLKNAYIALQAWKEAIYSDPLNTIDNWVGGDVCSYNGVFCASALDDPKLTVVAGVDLNHADIAGHLPEELGLLKDIALFHINSNRFCGIVPDSFENLTLLYEFDISNNRFVGDFPSVVLKMPNLKYLDIRFNDFEGVLPSQLFEKELDAIFLNNNRFTSVIPETLGKSKASVVTFANNNFTGCIPKSIGNMMNLNEVVFLGNDLGGCFPQEIGLLGNVTVFDASDNGFIGTLPNLSGLKNVEVIDIAHNKFSGYVSNTICQLPLLKNFTFSDNYFNGEAQTCMPSSNSGVAFDDSSNCLSGRKNQKTSKQCLPVLTRPVDCSKQCGGGSGNDHGSSHVPSTPKPTPSPSPLIEPPKPNPPKVETPKVEPPPTPKPQPPPTPKVEPPPTPKTQPPPTPKAEPPPTPKPQPPPTPKAEPPPTPKTQPPPTPKAEPPPTPKTQPPLTPKTEPPPAPKPQPPPTPKTEPQPAPKAQPPPTPKTEPSPTPKAEPPPTPKAQPPPTPKAEPPPTPKTQPPPTPKAEPPQLPPTPKVEPPPTPTAKPPSTPKAKPPPTPKAEPPSTPKVEPPPTPKSQPPPTPKAKSPPTPKVEPPQTPKVEPPPTLPPVEDIPPSRTPVSSPPPPVHSPPPPVHSPQPPMSSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPTHSPPPPVHSPPPPVHSPPPPTHSPPPPVHSPPPPPMHSPPPPVHSPPPPVYSPPPPVHSPPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPIFSPPPPVHSPPPPQWEDITLPPFFGSEYKSPPPPTIAGY* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00249 897 PRINTS Proline rich extensin signature 460 476 - -
Rops1g00249 897 PRINTS Proline rich extensin signature 479 496 - -
Rops1g00249 897 PRINTS Proline rich extensin signature 428 449 - -
Rops1g00249 897 FunFam Pollen-specific leucine-rich repeat extensin-like protein 1 94 392 - -
Rops1g00249 897 SUPERFAMILY L domain-like 95 386 - -
Rops1g00249 897 MobiDBLite consensus disorder prediction 415 897 - -
Rops1g00249 897 Gene3D Ribonuclease Inhibitor 93 393 IPR032675 -
Rops1g00249 897 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 65 571 - -
Rops1g00249 897 MobiDBLite consensus disorder prediction 430 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00249 Rops-Chr1 7044072 7046882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00249 1 571 Trihelix Transcription Factor Family AT3G19020 53.448 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00249 - - gmx:100804536 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00249 1 7044072 7046882 Rops1g00249 1 7044072 7046882 ECH