Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00245 ATGCACCAACAGGGTGAAGAAGCCAAGGTTGCATGCGGTGGTGTGATTGTTGGTCCAAGACCAATGGAATGGTCTACTGATCCATGTAGTGCTCCTCGGGGTCCTGGGCCGAATGGAAAGCAGCGGACCTCAAGTTTGGAATCACCAATCACATTGCTGATGGGTCACATATATACCATGAAATTCAATCCAACAGGATCAGTTGTGGCATCTGGGTCGCATGGCAGAGAAATTTCCCTCTGGAATGTGCATGGAGATTGCAAGAACTTCATGGTGCTCCCGAGAAGGTCCAAGGCTTCCTGGCCAGAAGAGACCGCGTTCCATTCCTTTGCTTCCGATGAAGATTTCCAGAAGGAATTTGTTGCTTTCATAGTGGAATGGAAGGTTTCCTTGCTCATCCTTGCAACTTTCCCTCTGCTTGTTCTAGCTAATTTTACTCAACAACTATCTCTTAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACAAGCATGATTGCAGGAGAGGGTGTTAGCAACATCGGAACAGTTGCAGCATTCGATGCACCAAACAAGATGTTGTCCATCTTTTGCCATGAGCTACGTGTCCCTCAGAGCCGTAGCCTGCGCCGGAGCCAAACTTTCGGCCTCTTGTTTGGCCTCTCTCAGCTTGCACTTTATGCCTCTGAAGCTCTCATTCTATAG 690 0.4855 MHQQGEEAKVACGGVIVGPRPMEWSTDPCSAPRGPGPNGKQRTSSLESPITLLMGHIYTMKFNPTGSVVASGSHGREISLWNVHGDCKNFMVLPRRSKASWPEETAFHSFASDEDFQKEFVAFIVEWKVSLLILATFPLLVLANFTQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIGTVAAFDAPNKMLSIFCHELRVPQSRSLRRSQTFGLLFGLSQLALYASEALIL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00245 229 Gene3D - 46 112 IPR015943 GO:0005515
Rops1g00245 229 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 121 229 IPR039421 -
Rops1g00245 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 83 IPR001680 GO:0005515
Rops1g00245 229 MobiDBLite consensus disorder prediction 23 44 - -
Rops1g00245 229 Pfam ABC transporter transmembrane region 121 228 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops1g00245 229 Gene3D ABC transporter type 1, transmembrane domain 120 229 IPR036640 GO:0005524|GO:0016020
Rops1g00245 229 SUPERFAMILY ABC transporter transmembrane region 121 229 IPR036640 GO:0005524|GO:0016020
Rops1g00245 229 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 120 229 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00245 Rops-Chr1 6954859 6955627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00245 123 227 Calmodulin-binding Proteins AT2G36910 38.095 2.44e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00245 K05658 - gmx:100797124 192.586