Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00234 ATGGACCTCAACAGGGTTTCTGCTACGTGTCATCATCTAAGATCCTTGGCTGCTTCAATAACGCCATGTACTAAGTTAAATATGTATCCTCATCAGCGGGAAGCAGTGGAGTGGATGTTGCATCGTGAACGAAATGTTGTACTTTTGCCACATCCTTTGTATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGACATAGTCACCGGGGAAGCTCCCACCATCAAAGATTTTTGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGCAAGATTGTAACAGCTCTTTCTCTTATCGTGAAGACGCAAGGTACATTGGCAGACCCACCAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAACCAGAAATGTGGCTATTATGAGATTGGTGGTAATAACATCACTGGTTGTACTATCTCGGGGAAGAGGGATGTGTGCCAAGATACTGGTAGAAATACTGAGAACCATGATCACTCCTCCAAAAGAGCCAGATTGATGGATCCTTGTCAGAAAATCACTACACTTCCTGGTTCATGTTTTGGAGAAGAACAAATCACCTGTAGGAGCTCACTTTGA 603 0.4378 MDLNRVSATCHHLRSLAASITPCTKLNMYPHQREAVEWMLHRERNVVLLPHPLYVALSTDDGFSFHVNTVSGDIVTGEAPTIKDFCGGMFCDEPGLGKIVTALSLIVKTQGTLADPPDGAQVVWCQHNGNQKCGYYEIGGNNITGCTISGKRDVCQDTGRNTENHDHSSKRARLMDPCQKITTLPGSCFGEEQITCRSSL* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00234 200 Pfam SNF2-related domain 31 115 IPR000330 GO:0005524|GO:0140658
Rops1g00234 200 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 3 116 - -
Rops1g00234 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 109 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00234 Rops-Chr1 6811914 6812516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00234 3 111 RAD5 or RAD16-like Gene Family AT5G43530 30.252 8.14e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops1g00234 SNF2_N 1.8e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00234 - - gmx:100803102 332.413