Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00233 ATGAAGCTTGAATCTTTGGTTGCAATGAAAAGGAAGCTCATGGCTCATGTTGCTCCCTACTCCCACGTGGGCCCAGTAGTTGTATATGCCATGGTTTTAGTTAGGAGTAGGCAAGGAAGTAGTGCAAAGCATGGCATTGTTGCACCCATTGGCTCCCATGCAAACTCATGTTGCACCCGAAAAAAAGGAAAACTCACGTGGAAAACAGTAGCTTTCATGAGACTTACATTTTGGGAGCTTTCATGGGATGTAATGGAACCCATATGCTTCTACATGACTTCTATGTATTTCATGGCTGGTTGCACGTTCTTCCTTGGGACCTCGAAAGAGCCTTGCTTTGAAGGTTTCTACCAAAGCCGTTTCAACACCAGGGTTATATTATGTGGTCTGATTGGAATTCCACCGTCAAATGGTGTCATTCCACAATCTCGAATGCATACCAAAAGTTTAGCTACATTGAAGCACCAGTTACTTAGGAACCGGCTTGTTGTGACGGCTCGACGTTGTATGGGAAAGAAAGAAAGCACGCAGCTCTTCTCTATGGGTCATGCAACATGGTCGGCTTTTGGAGCACATGCTGTCTCATCTGTTACGTTTGGAGTGACTGAGAACTATTGTTATGGATGCTACCGAAGGGCTTGGAAGGGAGCTCGTGCCACTCTTCAAAAGCTCTTATCAGCAACCGAGCCAACCTTGAGAGACAACGCGGTTCTGAGGCAGAAGTCACTTGTGCCTTTGAGCAGTGTAGAATTGCTTCTCCTTGTTGTCATTGGGGACTATACTGACTTCTTTGCGTCTCTGCACCACACTAAAAATTGTGGGCTCATATTCCGTGGGCCGCAGACTCCTGTTCTAGATAATTGGTATCACCTACCTGTTGCCTATCATGGAAGAGCATCTTCTGTTGTCATCTCTGGAACAGATATTGTTCGACCAAGAGGTCAAGCTCATCCAACTGGCAGCTCTCCACCCTACTTTGGCCCTTCCTTAAAGCTGGACTTTGAGTTGGAAATGGCTACTATTGTTGGACCTGGAAATGAATTGGGAAAACCCGTGGATATTAACAATGCTGAAGATCATATCTTTGGAATTGTTCTAATGAATGACTGGAGTGCTCGTGATATTCAGGCATGGGAATATATTCCTCTTGGTCCTTTTCTTGGCAAGAATTTCGAGAAGCTCCTTCTTTTGTTGAGCAAGAAAACTGAACAGCAGATTCTTGTCACTGGGAACAAGGTTGTTGACTCGCTCGCACCATATCAAAGAGGAGGAAAGGTTGGATTGTTCGGTGGTGCTGGTGTAGGAGAGACTGTGCCAATTATGGGACGTATTGATAATGTTGCAAAGACTCATGGTGGTTTCTCTGTGTTTGCTAGTGTTGGAGAACGAACCCGAGAGTGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTGGGTGATAAAGCAAAGTGA 1464 0.4501 MKLESLVAMKRKLMAHVAPYSHVGPVVVYAMVLVRSRQGSSAKHGIVAPIGSHANSCCTRKKGKLTWKTVAFMRLTFWELSWDVMEPICFYMTSMYFMAGCTFFLGTSKEPCFEGFYQSRFNTRVILCGLIGIPPSNGVIPQSRMHTKSLATLKHQLLRNRLVVTARRCMGKKESTQLFSMGHATWSAFGAHAVSSVTFGVTENYCYGCYRRAWKGARATLQKLLSATEPTLRDNAVLRQKSLVPLSSVELLLLVVIGDYTDFFASLHHTKNCGLIFRGPQTPVLDNWYHLPVAYHGRASSVVISGTDIVRPRGQAHPTGSSPPYFGPSLKLDFELEMATIVGPGNELGKPVDINNAEDHIFGIVLMNDWSARDIQAWEYIPLGPFLGKNFEKLLLLLSKKTEQQILVTGNKVVDSLAPYQRGGKVGLFGGAGVGETVPIMGRIDNVAKTHGGFSVFASVGERTRECNDLYREMIESGVIKLGDKAK* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00233 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 481 IPR027417 -
Rops1g00233 487 SUPERFAMILY FAH 257 392 IPR036663 GO:0003824
Rops1g00233 487 SUPERFAMILY Fumarylacetoacetate hydrolase, FAH, N-terminal domain 202 253 IPR036462 GO:0004334|GO:0009072
Rops1g00233 487 Pfam Mitochondrial calcium uniporter 66 125 IPR006769 -
Rops1g00233 487 Gene3D - 165 251 IPR036462 GO:0004334|GO:0009072
Rops1g00233 487 PANTHER FUMARYLACETOACETASE 204 392 IPR005959 GO:0004334|GO:0009072
Rops1g00233 487 Pfam Fumarylacetoacetate (FAA) hydrolase family 260 393 IPR011234 GO:0003824
Rops1g00233 487 Pfam Fumarylacetoacetase N-terminal 209 253 IPR015377 GO:0004334|GO:0009072
Rops1g00233 487 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 410 481 IPR000194 GO:0005524
Rops1g00233 487 Gene3D - 396 487 IPR027417 -
Rops1g00233 487 Gene3D - 253 395 IPR036663 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00233 Rops-Chr1 6742784 6744922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00233 126 170 Antiporters AT3G06450 84.444 1.10e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00233 K01555 - gmx:100817986 326.25