Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00229 ATGGGTTGGGTTCCTTCAGAACTGAGCTTGGATTTAAGACCCACTTTTGTTCCCAAAACCATCAATGATTTTCTCTGTCACCTTTCCACCATCAAAAGTGCAACCCACAAGTTGTCCACGCTTGATGATTTCATAGCCAGATTGGAACTTGAATTGACCAAGATCGATGCATTCAAACGCGAGCTTCCACTCTGCATGCTCCTCTTGAATGATGCAATTTCAGCTTTGAAGGTGGAATTAGCAAAATGCAGGGCACATAAATCTGAGCCAGTGTTGGAAGAGTTTATTCCATTGAAGAACGAGTGTGATGAAGATGATCAGAAGGAGGAAAGTGAAAAGGAGAAGGAATGCAAGGAAAAAAAGAATTGGATGAGTTCTGTTCAGCTATGGAACACCACTACTAGCAATAATAATAATAATGCATATGGCTGTGATATAAAGCAAAACTATAAACTAGAAAACCAGAAGAATGAAGAAGAAAGACAATCTGTGGCTGAGGATGACTTGTTCCAATATGGTAGAAATAGAAATGGAGGCAAAGGGTTTATTTTGCCTTTTTTCACTTACCCTACAACAAAGCAAGAGAAGGAAGATTCTGATGTCAATGAAACTGTAATGAAAAATTCAAGGGAGGGATCTGGTTCCATTGGATCCAGAACCACCTCTAGCAGGGTAGTTTCTTCCTCTTCTCAGGAGAAAACTTCCCGGAAACAAAGGAGGTGCTGGTCACCGGAGTTGCATTGTCGATTTGTTAAGGCTTTGGAAGAGCTTGGTGGTTCTCAAGCAGCAACACCAAAGCAAATTAGAGCACTCATGAGGGTTGATGGCCTGACCAATGATGAAGTAAAGAGTCATTTACAAAAATACCGGCTTCATCATACAAGGAGAGCTCCACCTGCCACAGCTGCTGCAACTGCTAATCAATCTGTTGTAGTTCTTAGAGACTTGTGGATGTACAATTACTCCTCAAAGGGTAGCAGTTCTGTTTCAGGTTCACCTCAAGGACCCCTCAATTTAACCACAGGATCTGGGGAAGGGACATCCCCAACCAAAGCAAAATGTGCCCTTCAACTTCAACCTACAACATACGGTGACTGTCTTGGATCTACATGA 1113 0.4214 MGWVPSELSLDLRPTFVPKTINDFLCHLSTIKSATHKLSTLDDFIARLELELTKIDAFKRELPLCMLLLNDAISALKVELAKCRAHKSEPVLEEFIPLKNECDEDDQKEESEKEKECKEKKNWMSSVQLWNTTTSNNNNNAYGCDIKQNYKLENQKNEEERQSVAEDDLFQYGRNRNGGKGFILPFFTYPTTKQEKEDSDVNETVMKNSREGSGSIGSRTTSSRVVSSSSQEKTSRKQRRCWSPELHCRFVKALEELGGSQAATPKQIRALMRVDGLTNDEVKSHLQKYRLHHTRRAPPATAAATANQSVVVLRDLWMYNYSSKGSSSVSGSPQGPLNLTTGSGEGTSPTKAKCALQLQPTTYGDCLGST* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00229 370 Gene3D - 236 294 - -
Rops1g00229 370 MobiDBLite consensus disorder prediction 324 352 - -
Rops1g00229 370 Coils Coil 147 167 - -
Rops1g00229 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 237 292 IPR006447 GO:0003677
Rops1g00229 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 346 IPR044787 GO:0003700|GO:0006355
Rops1g00229 370 FunFam Myb family transcription factor 236 294 - -
Rops1g00229 370 MobiDBLite consensus disorder prediction 207 238 - -
Rops1g00229 370 Pfam Myb-like DNA-binding domain 239 290 IPR001005 -
Rops1g00229 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 294 IPR017930 -
Rops1g00229 370 MobiDBLite consensus disorder prediction 207 232 - -
Rops1g00229 370 SUPERFAMILY Homeodomain-like 234 294 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00229 Rops-Chr1 6643059 6646718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00229 6 318 G2-like Transcription Factor Family AT2G03500 37.901 1.06e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops1g00229 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00229 - - gmx:100809323 390.578