Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00222 ATGGAAAAAGTTCTCGTTGAAGCCTTTGAACGAGGAACTAAAAGTAGTAAGGAAACCCCTTCTCGCAATACCGTTGATGGAGATCTACCTGTCCTTTTTCCCGACCTTGACTTGAAAGAAAAAGAAGAATTTGTCCACGGTCGGCACAATAGTGTAACACCAGCAAATCAGTGTGAAGGCTCGCACGTATCCCCTGCCGGTAGGGTGAAGTTGAGAAGGAGCCACGTTGAGACGGTGAAGCACGTCGACCTCACAGTCGGAGAAAGTGATACTGTTTTGGATTATGATGCTTTTGATAAAATAGACAAGGTAGTTGGGAATATTGTTGACATTGTTCGTAAGATGCTAGATGGTAAATATTTGTTCCGCCCACGCCATCCTGTTGGGATAGATGTTCATGCGAAAGAAGTGTTTGACAGCTTGAGTTACAATTCCGAAAGAATTCACTTCATAAGAATATGGGGAAAGGAAGGAATTGGTAAAACATCCATTGCCAAAGTCATTTACAACAGCATGTGTCACAATTTTGAGGGTTCGAGTTTCCTTGCAAATATTAATGATGTTTGGAAGCAGGATAATGGCAAGGATTATCTACATAAACAACTTCTTTCCGACATCAACAATACAACAGATATGATATTGCATAACACTGAAACAGAGAAAATATTTTCTCATAAACGGGCACTTGTAGTACTTGATGATGTGAGTAGTACAGAACAACTGCAATCGTTATGTTTTAGTCATGAATGGTTTGGTCTTGGAAGTATAATATTGATTACAGCTAGAGAAAATCATGTACTTGATCTCCTTGAATTGGACATTGATTATGAAATGAAGGAAATGGACTCAAGTGACTCACTTGCGCTTTTTAGTCGGCATACATTTAAGCATTTTAGTCCAATTGATAAGTGGATGAAACTCTCAAGAAAGGCAATTTCTTACTGTGGAGGACTGCCACTGGCTCTCGAAGTTCTGGGCTCGTTGTTACTGGAGAGAACAACATCAGAGTGGAAAAGTGTATTGAAGCGACTTGAAAGAAATCAAAATAATGCGGTACAAAATATACCAAGATTGAGCTATGATTTTCTAGATTATAATGAGAAAAAAATATTCCTTGACATAGCTTGTTTCTATATCGGAAAAGACAGAGACAATATTACCCAATTATTAAATGGTTGTGGACTTGCTGCAGAAACTGGGATAAGTAAACTCATTGAACGGAGCCTTCTAAAGGTTGACAAGAATAACAAACTTGAAATGCATGATTTATTGCAAGAGATGGGAAGAGAAATAGATCATTTTAAGCCAAAATCCAAATGGATCCACAATGTTTTCTTGAGTTTCAGAGGTGAAGACACTCGGAGGTCTTTTACCTCTCATCTCTGTGCCGCTTTACAAAATGCTGGTGTTGAGGTTTACATGGATGACAAACTTGAAAGAGGAGAAAATATCTCATCCTCGTTGTTGCAAGCAATTGAAGGTTCTCGAATTTCTATCATTATTTTCTCAATAAACTATGCTAATTCAAGATGGTGCCTTCAAGAGCTGGAGAAAATCATGGAGTGTCATAGAACTATTGGTCAAGAAGTTGTACCTGTATTCTACAGTGTGGAACCATCAGAAGTGCGTAACCAAATCGGTTCTTTTGGAAAAGCATTGGAAGGACTTAGACAAAGAAGCCCGGCCACGAAAGAGATGATTATCAGTTGGAAAAGAGCACTCACTGAAGCTGCAAACTTGTCTGGGTGGAATTTAAATAATTACAGTTGGGTCATCATGGTAGAGATTGAAATTCAAGCAACAATAACTGTCAAGGGATTGGCTTTTAGTTTGCCAAAAAATAATGATGTTATTTTTGAGACTAAAGCATTTGAGAAGATGAAGAGACTCAGAATGCTTCAACTTGGTCATGTAAAACTCACTGGAGATTTTGAATATTTATCAAAAGACTTGCGATGGCTCTGTTGGCATGGATTTCCTTTAAGTTACATGCCTGGGAACTTCAATCTGAAAAAATTAGTTGCTCTTGACCTAAAGTACAGCAATCTGCAATTAGTCTGGAAGGAGCCACAGTTGCTTGATAGGCTCAAAATTCTCAATCTGAGTCATTCTCATCACTTAACACATACTCCTGACTTTTCAAGACTACCAAATCTTGAGAAGCTAATGCTCAAAGATTGTCCGCAATTGTTGAAGATTCACTCAACAATTGGAGATCTCAAATATCTTATTCTGGTAAATTTGAAGGACTGTAAATCCCTCACTCACCTCCCAAGAAGAATCTATAAGTTGAAATCTCTGAAATCTCTTGTTCTTTCCGGCTGCTCAAAAATTGACAAGTTGGAAGAGGACATCATCCAAATGGAATCCTTGACAAGTCTAGTGGCAGATAACACTGCTATCACACAAGTGCCCCGTTCTCTAGTGAGATCAAAAAGTATCAAATATGTGTCTTTGTGTGGCTATGAAGGATTATCACGTCATGTATTTCCTTCTCTAATTTTGTCTTTAATGTCACCAACAAGTAATCCTATGTATAAAGTTTTTGGGAGCATTTCATCTTCACTGCAAAGTCTTTCACTTGGTTTGTCTGCCAAACATCGTGCAGCATTGGAATTAAGACCAAGAACACCTCAGATAACATATACGGAGACTTCCACATCAAGTGATTTTCAGAACTCCTTTGCTCTTGTTATTCAAGCCGGGGAGTGCAGCAAAGCCACTGATACTTTTACAGAGAGTACTTCACAGGGATGGACTAATGATGGATCTGATGACATATATCATAAAACCTTCAAAGGCAAAGGCTCCTCGGTATTTTTTAGAGTTCCTAATACTGGTGGCAAGTTGAAAGGGATGATTCTACGCATTGTTTATTCACCTTCCCTTGTCAACCTGGCTTCTGAATGTGATTTTCTTAGTGTTTCGATAATGAATTACACAAGGACTACCATTCAGTTCTACAAGCGAAACACAACAACTTCCCTCAATGATGAAGAATGGCAAGGATTGATGTCAAATCTTGAAACTGGTGATGATGTTGAGTTTGTTATAGTTTTGGGACATCGATTTACTGTGAAGGAGACAGTAGTCCATCTAATATATGGTGAATTAATGGACGACAAAATTGTGGGGTGTTCATCAGTGGCAGACGAGGGTCAAATCTGA 3168 0.3854 MEKVLVEAFERGTKSSKETPSRNTVDGDLPVLFPDLDLKEKEEFVHGRHNSVTPANQCEGSHVSPAGRVKLRRSHVETVKHVDLTVGESDTVLDYDAFDKIDKVVGNIVDIVRKMLDGKYLFRPRHPVGIDVHAKEVFDSLSYNSERIHFIRIWGKEGIGKTSIAKVIYNSMCHNFEGSSFLANINDVWKQDNGKDYLHKQLLSDINNTTDMILHNTETEKIFSHKRALVVLDDVSSTEQLQSLCFSHEWFGLGSIILITARENHVLDLLELDIDYEMKEMDSSDSLALFSRHTFKHFSPIDKWMKLSRKAISYCGGLPLALEVLGSLLLERTTSEWKSVLKRLERNQNNAVQNIPRLSYDFLDYNEKKIFLDIACFYIGKDRDNITQLLNGCGLAAETGISKLIERSLLKVDKNNKLEMHDLLQEMGREIDHFKPKSKWIHNVFLSFRGEDTRRSFTSHLCAALQNAGVEVYMDDKLERGENISSSLLQAIEGSRISIIIFSINYANSRWCLQELEKIMECHRTIGQEVVPVFYSVEPSEVRNQIGSFGKALEGLRQRSPATKEMIISWKRALTEAANLSGWNLNNYSWVIMVEIEIQATITVKGLAFSLPKNNDVIFETKAFEKMKRLRMLQLGHVKLTGDFEYLSKDLRWLCWHGFPLSYMPGNFNLKKLVALDLKYSNLQLVWKEPQLLDRLKILNLSHSHHLTHTPDFSRLPNLEKLMLKDCPQLLKIHSTIGDLKYLILVNLKDCKSLTHLPRRIYKLKSLKSLVLSGCSKIDKLEEDIIQMESLTSLVADNTAITQVPRSLVRSKSIKYVSLCGYEGLSRHVFPSLILSLMSPTSNPMYKVFGSISSSLQSLSLGLSAKHRAALELRPRTPQITYTETSTSSDFQNSFALVIQAGECSKATDTFTESTSQGWTNDGSDDIYHKTFKGKGSSVFFRVPNTGGKLKGMILRIVYSPSLVNLASECDFLSVSIMNYTRTTIQFYKRNTTTSLNDEEWQGLMSNLETGDDVEFVIVLGHRFTVKETVVHLIYGELMDDKIVGCSSVADEGQI* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00222 1055 SUPERFAMILY Toll/Interleukin receptor TIR domain 438 583 IPR035897 -
Rops1g00222 1055 PRINTS Disease resistance protein signature 222 236 - -
Rops1g00222 1055 PRINTS Disease resistance protein signature 762 778 - -
Rops1g00222 1055 PRINTS Disease resistance protein signature 315 329 - -
Rops1g00222 1055 PRINTS Disease resistance protein signature 150 165 - -
Rops1g00222 1055 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 92 436 IPR044974 GO:0006952
Rops1g00222 1055 SMART till_3 441 580 IPR000157 GO:0007165
Rops1g00222 1055 FunFam Disease resistance protein (TIR-NBS-LRR class) 438 603 - -
Rops1g00222 1055 Pfam TIR domain 442 592 IPR000157 GO:0007165
Rops1g00222 1055 ProSiteProfiles TIR domain profile. 440 605 IPR000157 GO:0007165
Rops1g00222 1055 Gene3D - 113 274 IPR027417 -
Rops1g00222 1055 Pfam NB-ARC domain 133 359 IPR002182 GO:0043531
Rops1g00222 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 374 IPR027417 -
Rops1g00222 1055 SUPERFAMILY L domain-like 611 859 - -
Rops1g00222 1055 Gene3D - 281 364 IPR042197 -
Rops1g00222 1055 SUPERFAMILY "Winged helix" DNA-binding domain 351 433 IPR036390 -
Rops1g00222 1055 Gene3D Ribonuclease Inhibitor 603 900 IPR032675 -
Rops1g00222 1055 Gene3D - 439 602 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00222 Rops-Chr1 6533429 6541513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00222 623 764 WRKY Transcription Factor Family AT5G45050 33.766 1.80e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00222 - - lja:Lj0g3v0353669.1 673.315