Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00217 ATGTCTTCCTCAGGTGCTTCAGCATCATCATCATCATCAAACACCACAATTCCCAGATGGACTCACCAAGTTTTCTTAAGCTTCACAACAGAAGACGTCGAAGTTGTTTCCTTCAGTTTTCTGGAGCATTTCATTGTTACTCTCAACGGGAAATTAGGAATGATCGGAATCCGAACTTGTGATCACCTCAACACGGTTCGAAAAGAATGTGAAAAGTCGTCACTGCCCTCACAGCTGCTGCTGCAAGCAATCGAAGGTTCCAGAGTTTCCATTGTTGTTTTCTCCGAGAAGTACGGTGGATCTAGCTGGTGTCTGCAGGAGCTGGAAAAAATAATGGAGTGTCACAGATCAAAGGGTCAGGTAGTTTTGCCAGTGTTCTATGGAGTGGACATGTGGGATGTGCGGAAGCAAAAGGGTATGTTTGGAGGAGTGTTTGAACAAATGATCAAGAGAATGTCAGTGAAGGAAGATGCTATGTTGAGTTGGAGAAGAGCCCTGGCCGAAGCTGCTTTCTTTCATGGTTGCTTCCTGCCCTCTTACTCTTTTAGTGATACTGTTTTGGATTGTGATGGTTTTGATGAAATAGACAAGGTAGTTGGGAATATTGTTGACATTGTTTGTATGTTGCTAGATGGTAAATATTTGTCCCACCCACGCCATCCGGTTGGGATAGATGTTCATGCGAAAGATGTGTTTGACAGCATGAGTTACAATTTTGAAAGAGTTCACTTTGTAGGAATATGGGGAAAGGAAGGAATTGGTAAAACATCCATTGCCAAAGTCATTTACAATAACATGTGCCACAGTTTTGAGTGTTCGAGATTCCTTGCAAATATTAAGGATGTATGGAAGCAGGACAATGGCAAGGATTATCTCCAAAAACAACTTCTTTCCGACATCAACAGTACAACAGATATGATAATGCATAATACTGAAACAGAGAAAATATTTTCTCATAAACCGGCACTTGTAGTACTTGATGATGTGAGTAATACAGACCAACTGCAATTGTTATGTGGAAGGCGTGAATGGTTTGGTCTTGGGAGTATAATATTGATTACAACAAGAGAAAAGCATGTACTTGATCTCCTTGATGTGGACATTGAATATGGAATGAAGGAAATAGACTCAAGTAAATCACTTGAGCTTTTTAGTTGGCATGCATTTAAGCATTTTAGTCCTCTCGATAATTGGATCAAACTCTCAAGAAAGGCAATTTCTTACTGTGGAGGACTGCCACTGGCTCTTGAAGTTCTTGGCTCATTGTTACTTGACAAAACAACATCAGAGTGGAAAAATGTTTTGAAGATACTTCAAAATAATCAAAGTAATGTGGTAAAAAATATGCTAAAAATGAGCTATGATTTTCTAGATGATAATGAGAAAAAAATATTCCTTCAAATAGCTTGTTTCTATATCGGAAAGGACAGACACAATATTACCCAATTATTAAATGGAAGTGGACTTGCTGCAGAAACTGGGATAAGTAAACTCATTGAACAGAGCCTTCTAAAGGTGGACAAGGATAACAAACTTGAAATGCATGACTTGTTGCAAGAGATGGGAAGAGAAAACAAATCATTTTAG 1587 0.3894 MSSSGASASSSSSNTTIPRWTHQVFLSFTTEDVEVVSFSFLEHFIVTLNGKLGMIGIRTCDHLNTVRKECEKSSLPSQLLLQAIEGSRVSIVVFSEKYGGSSWCLQELEKIMECHRSKGQVVLPVFYGVDMWDVRKQKGMFGGVFEQMIKRMSVKEDAMLSWRRALAEAAFFHGCFLPSYSFSDTVLDCDGFDEIDKVVGNIVDIVCMLLDGKYLSHPRHPVGIDVHAKDVFDSMSYNFERVHFVGIWGKEGIGKTSIAKVIYNNMCHSFECSRFLANIKDVWKQDNGKDYLQKQLLSDINSTTDMIMHNTETEKIFSHKPALVVLDDVSNTDQLQLLCGRREWFGLGSIILITTREKHVLDLLDVDIEYGMKEIDSSKSLELFSWHAFKHFSPLDNWIKLSRKAISYCGGLPLALEVLGSLLLDKTTSEWKNVLKILQNNQSNVVKNMLKMSYDFLDDNEKKIFLQIACFYIGKDRHNITQLLNGSGLAAETGISKLIEQSLLKVDKDNKLEMHDLLQEMGRENKSF* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00217 528 PRINTS Disease resistance protein signature 409 423 - -
Rops1g00217 528 PRINTS Disease resistance protein signature 244 259 - -
Rops1g00217 528 PRINTS Disease resistance protein signature 316 330 - -
Rops1g00217 528 SMART till_3 21 172 IPR000157 GO:0007165
Rops1g00217 528 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 170 IPR035897 -
Rops1g00217 528 Gene3D - 215 368 IPR027417 -
Rops1g00217 528 Gene3D - 375 458 IPR042197 -
Rops1g00217 528 Gene3D - 19 212 IPR035897 -
Rops1g00217 528 Pfam TIR domain 22 168 IPR000157 GO:0007165
Rops1g00217 528 SUPERFAMILY "Winged helix" DNA-binding domain 446 524 IPR036390 -
Rops1g00217 528 ProSiteProfiles TIR domain profile. 20 206 IPR000157 GO:0007165
Rops1g00217 528 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 524 IPR044974 GO:0006952
Rops1g00217 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 467 IPR027417 -
Rops1g00217 528 Pfam NB-ARC domain 243 455 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00217 Rops-Chr1 6439299 6444537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00217 242 524 WRKY Transcription Factor Family AT5G45050 32.746 4.07e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00217 - - lja:Lj0g3v0353669.1 629.017