Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00215 ATGTCTTCCTTAAGTGCTTCATCATCATCAAACACCGCAATTCCCAAATGGAATCGCCAAGTTCTCTTAAACTTCGCAACAAGAGACGTTAGAGTGCATCATTTCATTGATACTCTCCATAAAGAACTAGCAACAATGACTGCAACCCTAACACGCTTAAGCCCCTTCGAAATTTATGAAGGAGAACTTGAAAAGTGGCCAGCGTTCTCAAATCTGCAAGAAATCGAAGGTTTCAGGGTTTCCATCGTTGTTTTCTCCGAAGAGTACGGTGATGATATCGGGTGTTTGCGGGTGCTGGAAAAAATTATGGAGTGCCAGAGAGTCAAGGGTCAGGTGGTAATTCCTGTGTTCTATGGCGTGGATATGTGGGATGTGCGCAAGCAAAAGGGTAAGTTTGGAGATGTTTTTGAACAGATGATAAAGATAATGTCGGTGAAGGAAGACACTCTGTTGAGTTGGAGAAGAGCCCTGGCCGAAGCTGCTTTCTTCCCCGGTTACTTTCCTAGTGATACTGTTTTGGATTGGGATGCTTTTGATGAAATAGACAAGGTAGTTGGGAATATTGTTGACATTGTTCGTATGATGCTAAATGGTAAATATTTGTTCCGCCCACGCCATCCAGTTGGGATAGATGTTCATGCGAAAGAAGTGTTTGACAGCTTGAGTTATAATTCCGAAAAAATTCACTTCATAGGAATATGGGGAAAGGAAGGAATTGGTAAAACATCCATTGCCAAAGTAATTTACAACAGCATGTGTCAGAGTTTTGAGGGTTCGAGTTTCCTAGCAAATATTAAGGATGTATGGAAGCAGGATAATGGCAAGGATTATCTACAAAATCAACTTCTTTCTGACATCAACAATCATAACACTGAAACCAAGAAAATGTTTTCTCATAAAGGGGCACTTGTAGTACTTGATGATGTGAGTAATACAGACCAACTGCAATCATTGTGTTTTGGACATGACTGGCTTAGATTTGGGAGTATAATATTGATTACAAGCAGAGAAAAGCATGTACTTGATCTCCTTAAATTGGACATTGAATATGAAATGCAGGAGATGGACTCAAATGAATCACTTGAGCTTTTTAGTTGGCATGCGTTTAAGCATTCTAGTCCAAGCAATAAATGGATTAAACACTCAACAAAAGCAATTTCTTACTGTGGAGGACTGCCACTAGCTCTTGAGGTTCTGGGCTCGTGGTTACTTGACAGAACAACATCAGAGTGGAGAAGTGTATTGAAGCTACTTGAAAGAAATCAAAGTAATGCAGTACAAGATATACTAAAAATGAGCTATGATTTTCTAGATGATAATGAGAAGAAAGTATTCCTTGAAATAGCTTGTTTCTATATCGGTAGGGACAGACACAGTATTACCCAATTATTAAATGGCAGTGGACTTGCTGCAGAAACTGGGATAAGTAAACTCATTGAACGGAGCCTTCTAAAGGTTGACAAGAATAACAAGGTTGAAATGCATGATTTGTTGCAAGAGATGGGAAGAAAAATAAATGATTTTAAGCCAAAATCCACATGGATCCACAATGTGTTCTTGAGTTTCAGAGGTGAAGACACTCGGAGGTCTTTTACCTCTCATCTCTGTGCCGCTTTACAAAATGCTGGTATTGAGGTTTACATGGATGACAAACTTGAAAGAGGAGAAAATATCTCATCCTCGTTGTTGCAAGCAATTGAATGTTCTCAAATTTCCATCATCATTTTCTCAATTAACTATGCTAATTCAAGATGGTGCCTTCAAGAGCTGGAGAAAATCATGGAGTGTCATCGAACTATTGGTCAAGAAGTTGTACCTGTATTCTATGGTGTGGAACCATCAGAAGTGCGTAACCAAATCGGTTCTTTTGGAAAAGCATTGGAAGGACTTATAAAGAGAAGCTCGGCGACAAAAGAGATGATTATCGGTTGGAAAAGAGCACTCACTGAAGCTGCAAACTTGTCTGGGTGGAATTTAAATAATTACAGAACTGAAGCAACAATAGCTATCAAGGGATTGGCTTTTAGTTTGCCAGAAAACAATGCTGTTATTTTCGAGACTAATGCATTTAAGAAGATGAAGAGACTCAGATTGCTTCAACTTGGTCATGTGAAACTCACTGGAGATTTTGAATATTTATCAAAAGACTTGAGATGGCTCTGTTGGCATGGATTTCCTTTAAAATACATGCCTGGGAACTTTAATCTGCAGAAGTTAGTCGCTATTGACTTAAAGTACAGCAATCTGCAATTAGTCTGGAAGGAGCCGCAGTTGCTTGATAGGCTGAAAATCCTGAATCTGAGTCATTCTCATTACTTAACACAAACCCCTGAGTTTTCAAGACTACCGAATCTTGAAAAGCTAGTGCTCAAAGATTGTCCAAAATTGTCAAAGATTCACTCAACAATTGGAGATCTGAAATATCTTATTCTGGTAAATTTGAAGGACTGTAAATCCCTCCCTCACCTCCCAAGAAGTTTCTATAAGCTGAAATCTCTGAAATCTCTTGTTCTTTCTGGCTGTTCAAAAATTGACAAGTTGGAAGAGGACATCCTGCAAATGGAAGCCTTGACAAGTCTAGTGGCAGATAACACTGCCATCACACAAGTGCCCCATTCTCTAGTGAGATTAAAAAATATCAAATATGTGTCTTTGTGCGGCTATGAAGGATTACCACGTGATGTATTTCCTTCGCTATTTTTGTCTTTAATGTCACCAACAAGTAATCCTATGTATAAAGTTTTTGGGAGCATTTCATCTACACTTCAAAGTCTTTCACTTGGTTTATCTGCCAAAAATCGTGCAGCATTGGAATTAAGACCAAGAACACCTCAGTTAACTTACATGGAGACTCCCACAAACTCCATTCACATTGCAAGGTCTGAAAATTTCTCCAGTGCTCTTGTTATTCAAGCCGGGGAGTGCGGCAAAGCCACAGATACTTCTGCAGAGAGTATTTCACAGGGATGGACTAATGATGGATCTGGTGAAAGTGACTGTTTTCCTGGGATGACTCTACGCATAATTTATTCATCTTCCCTTGTCGACCTGGCTTCTGAATGTGATCTTCTTAGTGTCTCGATAATAAATTACACAAAGAAGACCATTCAGTCCTACAAGCGAGACACAACAACTTCCCTCAATGATTTAGAATGGCAAGGATTGATGTCAAATCTTGAAACTGGTGATGATGTGGAGGTTGTTATAGTTTTGGGACATCGGTTTACTGTGAAGGAGACTGTAGTCCATCTAATATACGATGAATTAACCGATGACAAAATTGTGGAGTGTTCATCAGCACCAGACAAGGGTCAAATCTGA 3321 0.393 MSSLSASSSSNTAIPKWNRQVLLNFATRDVRVHHFIDTLHKELATMTATLTRLSPFEIYEGELEKWPAFSNLQEIEGFRVSIVVFSEEYGDDIGCLRVLEKIMECQRVKGQVVIPVFYGVDMWDVRKQKGKFGDVFEQMIKIMSVKEDTLLSWRRALAEAAFFPGYFPSDTVLDWDAFDEIDKVVGNIVDIVRMMLNGKYLFRPRHPVGIDVHAKEVFDSLSYNSEKIHFIGIWGKEGIGKTSIAKVIYNSMCQSFEGSSFLANIKDVWKQDNGKDYLQNQLLSDINNHNTETKKMFSHKGALVVLDDVSNTDQLQSLCFGHDWLRFGSIILITSREKHVLDLLKLDIEYEMQEMDSNESLELFSWHAFKHSSPSNKWIKHSTKAISYCGGLPLALEVLGSWLLDRTTSEWRSVLKLLERNQSNAVQDILKMSYDFLDDNEKKVFLEIACFYIGRDRHSITQLLNGSGLAAETGISKLIERSLLKVDKNNKVEMHDLLQEMGRKINDFKPKSTWIHNVFLSFRGEDTRRSFTSHLCAALQNAGIEVYMDDKLERGENISSSLLQAIECSQISIIIFSINYANSRWCLQELEKIMECHRTIGQEVVPVFYGVEPSEVRNQIGSFGKALEGLIKRSSATKEMIIGWKRALTEAANLSGWNLNNYRTEATIAIKGLAFSLPENNAVIFETNAFKKMKRLRLLQLGHVKLTGDFEYLSKDLRWLCWHGFPLKYMPGNFNLQKLVAIDLKYSNLQLVWKEPQLLDRLKILNLSHSHYLTQTPEFSRLPNLEKLVLKDCPKLSKIHSTIGDLKYLILVNLKDCKSLPHLPRSFYKLKSLKSLVLSGCSKIDKLEEDILQMEALTSLVADNTAITQVPHSLVRLKNIKYVSLCGYEGLPRDVFPSLFLSLMSPTSNPMYKVFGSISSTLQSLSLGLSAKNRAALELRPRTPQLTYMETPTNSIHIARSENFSSALVIQAGECGKATDTSAESISQGWTNDGSGESDCFPGMTLRIIYSSSLVDLASECDLLSVSIINYTKKTIQSYKRDTTTSLNDLEWQGLMSNLETGDDVEVVIVLGHRFTVKETVVHLIYDELTDDKIVECSSAPDKGQI* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00215 1106 ProSiteProfiles TIR domain profile. 17 196 IPR000157 GO:0007165
Rops1g00215 1106 Pfam NB-ARC domain 213 435 IPR002182 GO:0043531
Rops1g00215 1106 ProSiteProfiles TIR domain profile. 514 674 IPR000157 GO:0007165
Rops1g00215 1106 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 510 IPR044974 GO:0006952
Rops1g00215 1106 FunFam Disease resistance protein (TIR-NBS-LRR class) 512 674 - -
Rops1g00215 1106 Pfam TIR domain 516 657 IPR000157 GO:0007165
Rops1g00215 1106 Pfam TIR domain 73 173 IPR000157 GO:0007165
Rops1g00215 1106 Gene3D - 196 349 IPR027417 -
Rops1g00215 1106 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Rops1g00215 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 446 IPR027417 -
Rops1g00215 1106 PRINTS Disease resistance protein signature 389 403 - -
Rops1g00215 1106 PRINTS Disease resistance protein signature 296 310 - -
Rops1g00215 1106 PRINTS Disease resistance protein signature 828 844 - -
Rops1g00215 1106 PRINTS Disease resistance protein signature 230 245 - -
Rops1g00215 1106 SMART till_3 18 163 IPR000157 GO:0007165
Rops1g00215 1106 SMART till_3 515 654 IPR000157 GO:0007165
Rops1g00215 1106 SUPERFAMILY "Winged helix" DNA-binding domain 425 507 IPR036390 -
Rops1g00215 1106 Gene3D - 513 671 IPR035897 -
Rops1g00215 1106 Gene3D - 12 195 IPR035897 -
Rops1g00215 1106 SUPERFAMILY Toll/Interleukin receptor TIR domain 512 657 IPR035897 -
Rops1g00215 1106 SUPERFAMILY L domain-like 675 929 - -
Rops1g00215 1106 Gene3D Ribonuclease Inhibitor 672 958 IPR032675 -
Rops1g00215 1106 Gene3D - 355 438 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00215 Rops-Chr1 6408808 6426670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00215 689 824 WRKY Transcription Factor Family AT5G45050 35.135 3.22e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00215 - - lja:Lj0g3v0353669.1 796.578