Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00200 ATGGTGGAGGAGGAGTCCTTGTACTGCCTGAATCTAACTCCTCTATGTTTGTTCATGAAAAATCTGAACCAGAAATACGAAGGGGTGTTGAAATTAACCAAAACTGTGACCAAAGATAAAAAAGGAAGGAAAGGAGCCTATAGTTTGTATTTTAGTGATTTAGGGTGGCTTGTTTGGTTGATTACTTTGTTTGATGGGTTTTTGAAGGTGTATGTGCCTCCTCATCCGTTGATCAAGCACTGGGTTTCTGTTATGAGGAATGAGCAAACTCATTGTCCTATCTTCAGAAATGCAATGGCTGAGTTGGGAAGGTTACTTATGTATGAAGCTTCAAGAGATTCGTTGGGAGCTATCTTCAGCACTGGAAAACTTTTTTGGCAAGTGTTTGGTGTTGATGCCGCAACTTTGTGCCATTTTGGCATTCCTGAACATGAACAAATCATGTGGAATGCCTTTAAACTAGCAGGAAAAAGTAATGTTTGGTGCCTTTATCCGAACAAGAACACAGTTTTAAAGTCAGTTCAAGATGCATTTTGTCAGGAACCTGTTGCAGATTGTGAAGTCACACCAGAAAAGTTAAAATTAGATACACCTCTGCATTTTATTTTAATTGATGGGACATGGAGCAATTCAGCTGCAACGTTTAGGCGCCTTCAGGATCAAGCAAAGTCAGCTTGGGGAGATGAGGACCTTGCTTGTATATCCCTAAATCCTGGTGTTTCTGCCATGCATGAACCTAGGCCTCAACCTTCTTGGGATCGCACATGTACAGCAGCAGCGGCCATTGGCCTGCTCTCAGAGCTGCAACTTCTTCCACAGTTTAGCTCCATTGGATTGGATAAACAGGTAGAAGAAATAGAACACGCTTTGACAGTCCTATTGGAAGCCTTGACAAGTCGACGTCTTCGTATGGGAAGGTCCATAACACGAAAAAGGTCCAGGACTGTGGCCACCAAATGTGTGCTATGCACACTAGCCCTATGTTGTCACAACAAGCCTAACCCTTCTACTTGTCGTCCTACCTTCCAGCTGCCTATCCCATCTGCAGGCTAA 1053 0.4321 MVEEESLYCLNLTPLCLFMKNLNQKYEGVLKLTKTVTKDKKGRKGAYSLYFSDLGWLVWLITLFDGFLKVYVPPHPLIKHWVSVMRNEQTHCPIFRNAMAELGRLLMYEASRDSLGAIFSTGKLFWQVFGVDAATLCHFGIPEHEQIMWNAFKLAGKSNVWCLYPNKNTVLKSVQDAFCQEPVADCEVTPEKLKLDTPLHFILIDGTWSNSAATFRRLQDQAKSAWGDEDLACISLNPGVSAMHEPRPQPSWDRTCTAAAAIGLLSELQLLPQFSSIGLDKQVEEIEHALTVLLEALTSRRLRMGRSITRKRSRTVATKCVLCTLALCCHNKPNPSTCRPTFQLPIPSAG* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00200 350 Pfam DTW domain 103 301 IPR005636 -
Rops1g00200 350 SUPERFAMILY PRTase-like 70 112 IPR029057 -
Rops1g00200 350 Gene3D - 68 130 IPR029057 -
Rops1g00200 350 PANTHER UNCHARACTERIZED 119 311 IPR039262 -
Rops1g00200 350 SMART DTW_2a 85 306 IPR005636 -
Rops1g00200 350 Pfam Uracil phosphoribosyltransferase 72 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00200 Rops-Chr1 5968073 5971482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00200 70 113 PRT Gene Family AT3G53900 84.091 6.22e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00200 - - gmx:100306372 324.324