Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00194 ATGACTGTGGATGAAGTGGGCAGTAGCTCTGAGTGGAGCAAAGAGCAAGATAAAGCATTTGAAAATGCCTTGGCAACTCATCCAGAGGATGCTTCAGATCGATGGGAAAAGATTGCGGCTGATGTACCAGGGAAAACTATAGAAGAAATTAAACAGCATTATGAACTCTTGGTTGATGATATTAACCAGATCGAATCTGGTTGTGTGCCTCTACCGTCATATAATTCTTCTTCAGAGGGCTCTACAAGCCATGCTAGTGATGAAGGAGCTGGCAAAAAGGGTGGCCATGCTGGGCACTACAACGGGGAGTCTAACCATGGAACTAAGGCTTCAAAATCAGATCAGGAACGACGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGTTATTTCTTCTGGGCTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACACCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCGAGCATACATGACATCACCAGTGTTAACAATGGAGAAATTTCAGCACCTCAAGGACCAATAACGGGTCAAACCAATGGTTCTGCTGGAAATTCTGCTGGCAAAACAGCCAAACAAGCCCCTCCAGTAACAACTGGGGTGCCAGGTGCAGGAATATATGCTGCTCCTACCATTGGACAACCTATAGGAGGACCTTTAGTATCTGCTGTTGGCACCCCTGTGAATCTTCCTGCCCCTGCACACATGGCATATGGTGTCCGAGCCCCGGTTCCCGGTGCAGTTGTACCTGGTGCACCAATGAACATGGGCGCTATGACATACCCTATGCCACATACATCTGCTCCTCACAGGTGA 891 0.4658 MTVDEVGSSSEWSKEQDKAFENALATHPEDASDRWEKIAADVPGKTIEEIKQHYELLVDDINQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGGHAGHYNGESNHGTKASKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGEISAPQGPITGQTNGSAGNSAGKTAKQAPPVTTGVPGAGIYAAPTIGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGAVVPGAPMNMGAMTYPMPHTSAPHR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00194 296 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Rops1g00194 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Rops1g00194 296 FunFam Transcription factor SRM1 4 71 - -
Rops1g00194 296 Gene3D - 121 173 - -
Rops1g00194 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Rops1g00194 296 MobiDBLite consensus disorder prediction 189 222 - -
Rops1g00194 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Rops1g00194 296 FunFam transcription factor MYB1R1 121 172 - -
Rops1g00194 296 CDD SANT 11 58 IPR001005 -
Rops1g00194 296 PANTHER TRANSCRIPTION FACTOR KUA1 8 291 - -
Rops1g00194 296 SMART sant 8 60 IPR001005 -
Rops1g00194 296 SMART sant 119 169 IPR001005 -
Rops1g00194 296 CDD SANT 122 167 IPR001005 -
Rops1g00194 296 MobiDBLite consensus disorder prediction 72 119 - -
Rops1g00194 296 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Rops1g00194 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Rops1g00194 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Rops1g00194 296 MobiDBLite consensus disorder prediction 189 218 - -
Rops1g00194 296 Gene3D - 4 71 - -
Rops1g00194 296 MobiDBLite consensus disorder prediction 10 35 - -
Rops1g00194 296 MobiDBLite consensus disorder prediction 1 35 - -
Rops1g00194 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Rops1g00194 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00194 Rops-Chr1 5850496 5857487 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g00194 Myb_DNA-binding 7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00194 - - gmx:100779792 532.717