Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g00182 | ATGATGACTCCAAACTTGAACCTGGAAGCTGAAAATAATTCAGAAGGCAACAGCAAAGTAGGTTCCAATATATCCTTGCAAGAAACATCCCATGATCTTGCCAAGGACAGAACCACCACTTCTTCATGTCTTACAAATCTTACTAAGGCTGATCCTGATCCAGGTCCAGGTCCTGCTGTTTCCCTTGACTTGACCCTCAACTTCAATCCCAGTGATGAAGAGTTGAAGGATCCAAGTGACACTAACAGTGAAGTGGGAGCTGAGGCTCATGCTTCAGCTCCAGCAATTCATAGAGTTTTCTCTTGTAATTATTGTAGGAGGAAATTCTTTAGCTCACAGGCATTAGGTGGCCATCAGAATGCTCATAAAAGGGAAAGGACAATGGCGAAGCGCGCATTGCGAATGGGGATGTTCACTGAAAGGTATACAAGCCTAGCATCTCTACCTCTTCATGGTTCTAATTTTAGGTCCCTTGGTATTGAAGCTCATGCTGCAATGCACCAAAGACACATGCCATCATCACTGAGGGCTCCTGATATGAGAGCTGCAGCAAAATTTGAGAAAGACTGTTTTGGAACACCAATCTTCATGCAAGATGATGATGTTGGTCAATTTTGGCCTGGGAGTTTTCGTCAGATAGATGAAAAGGCTGGTGTTAATTTAGGCCATGAACATGCTTATAATTCAAATACTAGTTTTGTAGCGACAGCACATCCTGCACAAACATCTACATCTCCTGATCTCACTCTGAGGCTTTAA | 759 | 0.4308 | MMTPNLNLEAENNSEGNSKVGSNISLQETSHDLAKDRTTTSSCLTNLTKADPDPGPGPAVSLDLTLNFNPSDEELKDPSDTNSEVGAEAHASAPAIHRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRALRMGMFTERYTSLASLPLHGSNFRSLGIEAHAAMHQRHMPSSLRAPDMRAAAKFEKDCFGTPIFMQDDDVGQFWPGSFRQIDEKAGVNLGHEHAYNSNTSFVATAHPAQTSTSPDLTLRL* | 253 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g00182 | 252 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 27 | 215 | IPR044246 | GO:0009788 | |
Rops1g00182 | 252 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
Rops1g00182 | 252 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 102 | 122 | IPR013087 | - | |
Rops1g00182 | 252 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 100 | 127 | IPR013087 | - | |
Rops1g00182 | 252 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Rops1g00182 | 252 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 128 | IPR036236 | - | |
Rops1g00182 | 252 | Gene3D | Classic Zinc Finger | 87 | 146 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g00182 | Rops-Chr1 | 5520406 | 5528096 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g00182 | 98 | 252 | C2H2 Transcription Factor Family | AT1G66140 | 44.382 | 1.24e-41 | 141 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Rops1g00182 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g00182 | - | - | gmx:100777133 | 371.703 |