Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00182 ATGATGACTCCAAACTTGAACCTGGAAGCTGAAAATAATTCAGAAGGCAACAGCAAAGTAGGTTCCAATATATCCTTGCAAGAAACATCCCATGATCTTGCCAAGGACAGAACCACCACTTCTTCATGTCTTACAAATCTTACTAAGGCTGATCCTGATCCAGGTCCAGGTCCTGCTGTTTCCCTTGACTTGACCCTCAACTTCAATCCCAGTGATGAAGAGTTGAAGGATCCAAGTGACACTAACAGTGAAGTGGGAGCTGAGGCTCATGCTTCAGCTCCAGCAATTCATAGAGTTTTCTCTTGTAATTATTGTAGGAGGAAATTCTTTAGCTCACAGGCATTAGGTGGCCATCAGAATGCTCATAAAAGGGAAAGGACAATGGCGAAGCGCGCATTGCGAATGGGGATGTTCACTGAAAGGTATACAAGCCTAGCATCTCTACCTCTTCATGGTTCTAATTTTAGGTCCCTTGGTATTGAAGCTCATGCTGCAATGCACCAAAGACACATGCCATCATCACTGAGGGCTCCTGATATGAGAGCTGCAGCAAAATTTGAGAAAGACTGTTTTGGAACACCAATCTTCATGCAAGATGATGATGTTGGTCAATTTTGGCCTGGGAGTTTTCGTCAGATAGATGAAAAGGCTGGTGTTAATTTAGGCCATGAACATGCTTATAATTCAAATACTAGTTTTGTAGCGACAGCACATCCTGCACAAACATCTACATCTCCTGATCTCACTCTGAGGCTTTAA 759 0.4308 MMTPNLNLEAENNSEGNSKVGSNISLQETSHDLAKDRTTTSSCLTNLTKADPDPGPGPAVSLDLTLNFNPSDEELKDPSDTNSEVGAEAHASAPAIHRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRALRMGMFTERYTSLASLPLHGSNFRSLGIEAHAAMHQRHMPSSLRAPDMRAAAKFEKDCFGTPIFMQDDDVGQFWPGSFRQIDEKAGVNLGHEHAYNSNTSFVATAHPAQTSTSPDLTLRL* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00182 252 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 215 IPR044246 GO:0009788
Rops1g00182 252 MobiDBLite consensus disorder prediction 1 90 - -
Rops1g00182 252 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Rops1g00182 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Rops1g00182 252 MobiDBLite consensus disorder prediction 1 29 - -
Rops1g00182 252 SUPERFAMILY beta-beta-alpha zinc fingers 98 128 IPR036236 -
Rops1g00182 252 Gene3D Classic Zinc Finger 87 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00182 Rops-Chr1 5520406 5528096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00182 98 252 C2H2 Transcription Factor Family AT1G66140 44.382 1.24e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g00182 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00182 - - gmx:100777133 371.703