Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00167 ATGTTTCTTCGTTTGTGCTGCTTTGCATGTCTCTTTCTCTTGATGGGGTTGAGAGTAGAGCTAGCTAATGCTCAGTTTTACAGAAAAATTGGAGATAAGCTCCTCCCTTACTCAACAATAGTAGTGGATCCATCAGGGCATGGAAACTTTTCTACCATACAATCTGCTATTGATTCAGTCCCTTCCAACAACAGGTATTGGGTTTCCATTAAGGTGAAGGAAGGTACCTACAGAGAAAAAGTGAAGATTCCTTATGATAAGCCTTACATCATACTAAAAGGAGAGGGAAAGAGGAAAACGTTTGTTGAATGGGATGACCATGATAATACCTCACAGAGCCCAACGTTCGCAACCATGGCTGATAATGTTGTTGTCAAATGCATGAGCTTTAGGAATTCATACAACAATCCAATAAATAATAAACCCAAGGTACCTGCAGTAGCTGCAATGGTAAGTGGCGATAAGTCCTACTTTTTAAGAGTTGGCTTCTTTGGTTTGCAAGACACTTTGTGGGACGACAGTGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCTATTGATTTTATCTTCGGTGCAGGCCAGTCTTTGTTTGAGAGGTGTTCCATATCGGTTATTGGTGCAGCCCTAGATCCAGGCATTCCTGGTTTTATCACAGCACAAGGGAGAACAAAACCAAACGAAGCAAGTGGGTTTGTTTTCAAAGATTGCCACGTGTTTGGAAATGGGACAGCTTACTTGGGAAGGGCATGGAGAGGTTACTCTAGAGTCCTGTTCTACAAGACCAACATGTCCAACATTATTCAACCTAGTGGTTGGGAGGCATGGAATTTCGTTGGACATGAGGATCGCATAACATTTGCAGAGTATGGCAATTTTGGACCTGGTTCTGACACGTCCCAACGAGTGAGTTGGACTAAGAAGTTGGATTTAACAACAGTTAATAACATGGCAAGTATGAACTTAAACAGAACAATGGCTTCAGAACCAATAGTCATAAAGATGATGAAAAGGACTTGA 1023 0.4154 MFLRLCCFACLFLLMGLRVELANAQFYRKIGDKLLPYSTIVVDPSGHGNFSTIQSAIDSVPSNNRYWVSIKVKEGTYREKVKIPYDKPYIILKGEGKRKTFVEWDDHDNTSQSPTFATMADNVVVKCMSFRNSYNNPINNKPKVPAVAAMVSGDKSYFLRVGFFGLQDTLWDDSGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGAALDPGIPGFITAQGRTKPNEASGFVFKDCHVFGNGTAYLGRAWRGYSRVLFYKTNMSNIIQPSGWEAWNFVGHEDRITFAEYGNFGPGSDTSQRVSWTKKLDLTTVNNMASMNLNRTMASEPIVIKMMKRT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00167 340 Pfam Pectinesterase 40 309 IPR000070 GO:0030599|GO:0042545
Rops1g00167 340 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 323 - -
Rops1g00167 340 FunFam Pectinesterase 36 328 - -
Rops1g00167 340 SUPERFAMILY Pectin lyase-like 38 318 IPR011050 -
Rops1g00167 340 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Rops1g00167 340 Gene3D - 37 336 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00167 Rops-Chr1 5211397 5217010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00167 39 283 Carbohydrate Esterase AT2G19150 48.374 2.13e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00167 - - gmx:100819252 535.798