Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00166 ATGGTTTTGTTGGGGTTCTTTGTGGATACTCATACATCAAGGAGGTTGCATTTTTCTCACTTATGGGTGGTGGATTTTAAAGGGGGCGTTGTTATGGGTTCTGGTCGTGGTGCCCCTTACTTGCTCCTTGTTTCCTGCTTATGGGGTCTCTCGATCTCACTCTCTTCTGCTGCTAGGCTTAGTGTTTCAAGGCAGATGCTTGAGCCAGCTTTTGTTCATCCGTTCCTCAAAGATCACGAGATTCAGATGAGACCAAGTTTCCACCCTGAAGGGCTTTTTGATGAGAACAAGGTATCTGAAAAACCCAAAGAAGCTTCCATCACTCAGCTGTGGCATGCTAATGGTAAATGCGAAGAGGGCACAATGCCCATCCGAAGAACAAAGGAGGATGATGTTCTGAGAGCAAGTTCCGTCAAAAGATATGGAAGGAAGAAGCACAGCCACAACATGGTATCAACCATCACAACAGCTCCTGAAGTCCTGTTGGGAGCTACCCATTACTCAATGGCAGTGGATATGTGGTCAGTTTGCTGCATATTTGCTGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACAACTCCTTCATATATCCAGGCTGTTGGGCACTTCTAATGAAGACGTGTGGCCAGGACACTCCCCACGTCCTCCATGTCACCACTCCCTTCGATGGCCAGCAGACTGGGACCTCGGGTCTCCGCAAGATGCAAATGGAACGAGCTGCATGCTGCACCCACCGTGCGTACACAGCCTCAGCCTTAATGCAAGGAGAGAACGCGACGTAGCCATGGGGAGGAGACCTGCAAGGTGTTATCGTCAGAATAAAAACAAGCCATCTCCATTGCAGAGGAGGAGTATTGACGAGGATGCATTAATCAAAGCCCTTGATAGTGGAATGGTTGCTCAGGCAGCTCTTGATGTCTTCACCGAGGAGCCTCCCATGAACGATGACTTCGACTTCGCTGCTGGAGATAACAACAACGTCCCCGTTCTTAAGGTTGGTGAGGAGAAGGAGATTGGGAAGCAAGGGTTGAAGATCGTGGAAGAAATACAGTCTCAGTCAGAGAATTATAGGTCTTCATCATCATCAGCTAGCGGCCCAGCAAGTAGGGTGCCGTCAAGTAACTTTTTCTACCTGCGGAAACCTGGTTCACAGGGCCAACCAATCTCATTTGAGGATTCACCTGAGTGGGATGATACTGATATTCACGTTAGAGTTGAGGAAGGAGGGGGCGTTGTTATGGGTTCTGGTCGTGGTGCCCCTTACTTGCTCCTTGTTTCCTGCTTATGGGGTCTCTCGATCTCACTCTCTTCTGCTGCTAGGCTTAGTGTTTCAAGGCAGAAGCTTGAGCCAGCTTTTGTTCATCCGTTCCTCAAAGATCACGAGATTCAGATGAGACCAAGTTTCCACCCTGAAGGGCTTTTTGATGAGAACAAGGTATCTGAAAAACCCAAAGAAGCTTCCATCACTCAGTTGTGGCATGCTAATGGCACACACGAGATACTGACCCTTTGGTATAGAGCTCCTGAAGTCCTGTTGGGAGCTACCCATTACTCAATGGCAGTGGATATGTGGTCAGTTTGCTGCATATTTGCTGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACGACTCCTTCATATATTCAGGCTGTTGGGCACTCCTAATGAAGACGTGTGGCCAGGAGTTAGTAAACTAATGAATTGGCATGAGAACTTCCTCGGCAGGGAGCGTGCAAACGTCCTTCTCCCATGGAGTGAAGGGCCTCATGGGGTCTTCAATGCATGCATGCAGCACTCCCCACGTCCTCCATGTCACCACTCCTTCCGATGGCCAGCAGACTGGGACCTAGGGTCTCCGCAAGATGCAAATGGAACGAGCTGCATGCTGCACCCACCGTGCGTACACACCAAATTTCTTAATGCGAGGAGAGAACGCGACGTAGCCATGGGGAGGAGACCTGCAAGGTGTTATCGTCAGAATAAAAACAAGCCATCTCCATTGCAGAGGAGGAGTATTGACGAGGATGCATTAATCAAAGCCCTTGATAGTGGAATGGTTGCTCAGGCAGCTCTTGATGTCTTCACCGAGGAGCCTCCCATGAACGATGACTTCGACTTCGCTGCTGGAGATAACAACAACGTCCCCGTTCTTAAGGTTGGTGAGGAGAAGGAGATTGGGAAGCAAGGGTTGAAGATCGTGGAAGAAATACAGTCTCAGTCAGAGAATTATAGGTCTTCATCATCATCAGCTAGCGACCCAGCAAGTAGGGTGCCGTCAAGTAACTTTTTCTACCTGCGGAAACCTGGTTCACAGGGCCAACCAATCTCATTTGAGGATTCACCTGAGTGGGATGATACTGATATTCACGTTAGAGTTGAGGAAGGAGTGATCCCAATAAAAGTGGATCACTTTGAGCCTAGTGCAAAAGCATTGGGTCTCTAG 2475 0.4889 MVLLGFFVDTHTSRRLHFSHLWVVDFKGGVVMGSGRGAPYLLLVSCLWGLSISLSSAARLSVSRQMLEPAFVHPFLKDHEIQMRPSFHPEGLFDENKVSEKPKEASITQLWHANGKCEEGTMPIRRTKEDDVLRASSVKRYGRKKHSHNMVSTITTAPEVLLGATHYSMAVDMWSVCCIFAELVTKQALFPGDSELQQLLHISRLLGTSNEDVWPGHSPRPPCHHSLRWPADWDLGSPQDANGTSCMLHPPCVHSLSLNARRERDVAMGRRPARCYRQNKNKPSPLQRRSIDEDALIKALDSGMVAQAALDVFTEEPPMNDDFDFAAGDNNNVPVLKVGEEKEIGKQGLKIVEEIQSQSENYRSSSSSASGPASRVPSSNFFYLRKPGSQGQPISFEDSPEWDDTDIHVRVEEGGGVVMGSGRGAPYLLLVSCLWGLSISLSSAARLSVSRQKLEPAFVHPFLKDHEIQMRPSFHPEGLFDENKVSEKPKEASITQLWHANGTHEILTLWYRAPEVLLGATHYSMAVDMWSVCCIFAELVTKQALFPGDSELQRLLHIFRLLGTPNEDVWPGVSKLMNWHENFLGRERANVLLPWSEGPHGVFNACMQHSPRPPCHHSFRWPADWDLGSPQDANGTSCMLHPPCVHTKFLNARRERDVAMGRRPARCYRQNKNKPSPLQRRSIDEDALIKALDSGMVAQAALDVFTEEPPMNDDFDFAAGDNNNVPVLKVGEEKEIGKQGLKIVEEIQSQSENYRSSSSSASDPASRVPSSNFFYLRKPGSQGQPISFEDSPEWDDTDIHVRVEEGVIPIKVDHFEPSAKALGL* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00166 824 Pfam Neprosin activation peptide 68 153 IPR025521 -
Rops1g00166 824 MobiDBLite consensus disorder prediction 752 769 - -
Rops1g00166 824 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 290 322 IPR036291 -
Rops1g00166 824 Gene3D Transferase(Phosphotransferase) domain 1 502 581 - -
Rops1g00166 824 Gene3D Transferase(Phosphotransferase) domain 1 143 218 - -
Rops1g00166 824 SUPERFAMILY Protein kinase-like (PK-like) 502 586 IPR011009 -
Rops1g00166 824 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 682 714 IPR036291 -
Rops1g00166 824 Pfam Protein kinase domain 142 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00166 824 Pfam Protein kinase domain 503 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00166 824 SUPERFAMILY Protein kinase-like (PK-like) 144 229 IPR011009 -
Rops1g00166 824 MobiDBLite consensus disorder prediction 752 773 - -
Rops1g00166 824 PANTHER CELL DIVISION PROTEIN KINASE 145 220 - -
Rops1g00166 824 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 683 714 IPR006140 GO:0051287
Rops1g00166 824 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 291 322 IPR006140 GO:0051287
Rops1g00166 824 Gene3D - 289 333 - -
Rops1g00166 824 Gene3D - 681 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00166 Rops-Chr1 5129727 5151881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00166 503 581 Core Cell Cycle Gene Families AT1G20930 87.342 5.01e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Rops1g00166 Pkinase 5.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00166 K07760 - gmx:100808302 165.236