Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00164 ATGGAAAAACCCCATCTTTCTCAGTCTGTTTCTTTGGTTGTTTGTCTTATGTTTTTTCCTCTGATGTTTATGTGTGCATGGAGTCAGGACGTTGATGTGATGCAAAACCTGAAGAAGTCCATCACTGCATCCAGTGATCTTCAATGGTCAGACTCAGATGTGTGTAAGTGGAATCACATTCAGTGCAATTCAGCGAAGAGCGTCACTGCTATTCAAATTGGGAAATTGAATCTTCAAGGCTCTCTGCCTAAAGAACTGGTGCAGCTCACAGAGTTAACACGTTTTGAGTGCATGAACAATGGTTTTTCAGGGCCTTTCCCTTATATGCCGAAGTCATTAGAGACTCTGATTATCCATGACAACAATTTCAGTTCCATACCCAATGATTTCTTCAGCAAAATGACCAATTTGAGAGAGGTGAGGATTGACTATAACCCCTTCCCTCAGTGGCAGGTCCCTGCTAGCCTCAAGGACTGTGTGGCTTTGCAGACTTTCTCTGCAATGAATGCTAGTTTTGTTGGCCAAATCCCAGATTTTTTTGGGAAAGATGGTCCCTTCTCAGGTTTGGCATTCTTGGGCTTGTGTTTTAATTCTCTTGAAGGTGGGTTGCCTGCAAGCTTTTCTGGGAGTTCCATAGAGAATCTTTTGGTGAATGGCCAGAAAAGTAGCTCTAAACTCAATGGTACTCTTGCTGTGTTACAGAACATGACATCTCTGAAACAAATTTGGGTACATGGTAATTCATTTACTGGTCCTATACCAGACTTATCAAATCATGATCAATTGTTTGATGTGAGTTTGAGGGATAACCAGTTGACTGGTGTTATTCCACCCTCCCTCACTGCTCTTCCTGCTCTGCAAGTTGTGAACTTGACCAACAATTTACTTCAAGGGTCCCCTCCCAAGTTTAAAGATGGGGTGAGGGTTGATAATGATATGGACAAGGGGATCAATAGATTTTGCACAAAGGTGGTCGGTCAGCCATGTAGTCCCCTTGTGAATGCTTTGCTGTCTGTTGTTGAACCTTTGGGATATCCCTCAATATTTGCTGATAGTTGGCAGGGTAATGATCCTTGTGGTAAAAATTGGATGGGGATTGTTTGCTTCGGTAGTAACATTTCAATTATCAACTTTCAGAACAAGGGTCTTTCTGGCAATATTTCTCCTAGTTTTGCAAGCCTTACATCTGTGACAAAGTTGATTCTTGCTGATAATGGTCTCACTGGTACTATACCAAAGGAACTCACTAGTATGCCTCTTTTGAAAGAATTAGATGTTTCGAATAATAAGTTGTATGGTCAGATACCATCGTTCCGTAATGATGTGGTTCTTAAGACTGATGGAAATCCGGACATTGGAAAGGATAAACCTCAAACCCCACCAGGCTCGAATCCTGGAAGTAAGGATAAGAAACTTAGTTCTGGAGCCATTGTTGGCGTTGTGGTGGGAGCTGTCAGCTTACTTGGTCTAGGGGCTCTGGTATTTGTTATCTATGGTAGAAAACATAAGCGAGCTGACAAAGTTCAAAATCCAAATGCTGTAGTGGTACATCCCCGTCAATCTGGAGATGGAAATGGTTTGAAGATAAGTGTTGCAGCTGCAGGTGTTGGTGTTGGTGGTGGAGGAACTGCTGCTGCATTTAGTCCAGGAAGTAATGTTCAAAATGTGGAAGCTGGTAGTATGGTAATTTCAATTCAAGTTTTGAGAGAAGTTACAAACAATTTTAGTGAAGGAAACATATTAGGGAAGGGTGGTTTTGGCACTGTATATAAAGGAGAATTGCATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATCTGGAATGGTGGGTGAGAAAGGGCTGAATGAGTTCAAGTCAGAAATTGCAGTACTTACTAAGGTTAGACACAGGCATTTGGTTGCACTCCTGGGCTATTGCTTGGATGAAAATGAGAGGCTTCTTGTGTATGAATACATGCCTCAGGGGCCTCTCAGTAAACATTTGTTTGACTGGAAAGATGAAGAGTCAAAACCACTGGAATGGAAGACAAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGAGTTGAATATCTTCATGGTTTGGCCCAACAAATTTTTATCCACAGGGATTTGAAACCATCAAACATCTTGCTTGGGGATGATATGCGTGCTAAAGTATCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAAGTCTCATTCGAGACTAGACTTGCTGGAACTTTTGGATATCTGGCACCAGAGTATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTATACAGCTATGGAGTGATTCTCATGGAGATGATAACTGGAAGGAAAGCAATTGACAATAGCCAACGAGAAGAGAATGTCCACCTTGTTACATGGTTCCGGAGGATGCTACTGATCAAAGATTCATTTGGAAAGCTTATTGACCCAACAATGGATGTTGATGAGGAAGCATTGGAGGGTTTAAGGACTGTTGCAGAGTTGGCTGGCCATTGTTGTGCTAGGGAGCCTTATCAGCGTCCTGACATGAGCCATGTAGTGAATGTGTTAGCACCTCTTGTTGAGATTTGGAAGCCTGCAGAACCAGATGCTGATGATATGTATGGGATTGATTTGGATATGACTTTGCCTCAAGCACTCAGTAAGTGGCAAGCTATTGAAGGAAGGAGCACCATTGATCAATCATTTTCTTCATCAATGCTTACTAGTGGGGATAATACACAATCAAGCATACCAACTAGGCCTTCTGGATTTGCAGATTCCTTTACATCTTCTGATGGAAGATGA 2790 0.4226 MEKPHLSQSVSLVVCLMFFPLMFMCAWSQDVDVMQNLKKSITASSDLQWSDSDVCKWNHIQCNSAKSVTAIQIGKLNLQGSLPKELVQLTELTRFECMNNGFSGPFPYMPKSLETLIIHDNNFSSIPNDFFSKMTNLREVRIDYNPFPQWQVPASLKDCVALQTFSAMNASFVGQIPDFFGKDGPFSGLAFLGLCFNSLEGGLPASFSGSSIENLLVNGQKSSSKLNGTLAVLQNMTSLKQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNQLTGVIPPSLTALPALQVVNLTNNLLQGSPPKFKDGVRVDNDMDKGINRFCTKVVGQPCSPLVNALLSVVEPLGYPSIFADSWQGNDPCGKNWMGIVCFGSNISIINFQNKGLSGNISPSFASLTSVTKLILADNGLTGTIPKELTSMPLLKELDVSNNKLYGQIPSFRNDVVLKTDGNPDIGKDKPQTPPGSNPGSKDKKLSSGAIVGVVVGAVSLLGLGALVFVIYGRKHKRADKVQNPNAVVVHPRQSGDGNGLKISVAAAGVGVGGGGTAAAFSPGSNVQNVEAGSMVISIQVLREVTNNFSEGNILGKGGFGTVYKGELHDGTKIAVKRMESGMVGEKGLNEFKSEIAVLTKVRHRHLVALLGYCLDENERLLVYEYMPQGPLSKHLFDWKDEESKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQVSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKAIDNSQREENVHLVTWFRRMLLIKDSFGKLIDPTMDVDEEALEGLRTVAELAGHCCAREPYQRPDMSHVVNVLAPLVEIWKPAEPDADDMYGIDLDMTLPQALSKWQAIEGRSTIDQSFSSSMLTSGDNTQSSIPTRPSGFADSFTSSDGR* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00164 929 Gene3D Ribonuclease Inhibitor 27 327 IPR032675 -
Rops1g00164 929 Gene3D Ribonuclease Inhibitor 332 456 IPR032675 -
Rops1g00164 929 SUPERFAMILY L domain-like 50 441 - -
Rops1g00164 929 Gene3D Transferase(Phosphotransferase) domain 1 653 866 - -
Rops1g00164 929 FunFam Receptor-like kinase TMK4 28 326 - -
Rops1g00164 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Rops1g00164 929 SUPERFAMILY Protein kinase-like (PK-like) 555 861 IPR011009 -
Rops1g00164 929 Pfam Leucine rich repeat N-terminal domain 334 368 IPR013210 -
Rops1g00164 929 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Rops1g00164 929 Pfam Protein kinase domain 576 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00164 929 MobiDBLite consensus disorder prediction 898 929 - -
Rops1g00164 929 PANTHER OSJNBA0070M12.3 PROTEIN 12 929 - -
Rops1g00164 929 ProSiteProfiles Leucine-rich repeat profile. 112 133 IPR001611 GO:0005515
Rops1g00164 929 MobiDBLite consensus disorder prediction 446 471 - -
Rops1g00164 929 CDD STKc_IRAK 581 854 - -
Rops1g00164 929 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Rops1g00164 929 SMART serkin_6 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00164 929 FunFam Leucine-rich repeat receptor-like kinase 331 455 - -
Rops1g00164 929 ProSiteProfiles Protein kinase domain profile. 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00164 929 Gene3D Phosphorylase Kinase; domain 1 544 652 - -
Rops1g00164 929 FunFam receptor protein kinase TMK1 540 652 - -
Rops1g00164 929 SMART LRR_typ_2 283 305 IPR003591 -
Rops1g00164 929 SMART LRR_typ_2 111 133 IPR003591 -
Rops1g00164 929 SMART LRR_typ_2 418 440 IPR003591 -
Rops1g00164 929 FunFam receptor protein kinase TMK1 653 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00164 Rops-Chr1 4999174 5003112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00164 68 857 Receptor kinase-like Gene Family AT5G07280 30.981 9.68e-81 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Rops1g00164 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00164 - K00924 gmx:100776064 1414.05