Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00160 ATGATGGGGCAAAAAGATTGGCTTGATACCCTTTTGAGTAGCAGCTTTGGCTATTGTGAAGACCATCAAGACCTAAGGTTTAGTGAGAAGAATGTGTTCTGTATAGACTGTGCAGTTAGCTTGTGTAGGCACTGTAAGGAAGCTCATAACCTCCATGGAAGGTTTCAGATATACAAATATTGCTATCAGGATGTTGTCAGGCATTCTGAGATGCATAAGTATTTTGACTGCTCAAATATTCAGACTTATATATCCAATAATGACAAGATTGTGCATCTCAAACCCCGGCCTTCATTCAAAGACAGCAAACTAGCCAAAAGATCTAAACTTGCTAATCAAAGCCCTGAGCCTCAAGCCAAAGAAACCAAAATATCAACACCTTCAAAGTCAGGTGGTAATTGTGAAGAATGTGGGAAACATTTACAAGATGGGCGTAATAGATTCTGCTCCATTACATGCAAGATCTCAGTGCTTCCAGTGGAGCCCCAAAACCAAGGTCTTCCCATTCAAGGAAATGATAAACAAAATTCAGAAACTGAGTCATCAATCTCTGTAGCTGAGCCATATGAATGTGTTGAAAAAGTGAATTTCAGATTGCATCCAAGGAAAACCACCCCTCATAGATCTCCCATGTTTTGA 639 0.3991 MMGQKDWLDTLLSSSFGYCEDHQDLRFSEKNVFCIDCAVSLCRHCKEAHNLHGRFQIYKYCYQDVVRHSEMHKYFDCSNIQTYISNNDKIVHLKPRPSFKDSKLAKRSKLANQSPEPQAKETKISTPSKSGGNCEECGKHLQDGRNRFCSITCKISVLPVEPQNQGLPIQGNDKQNSETESSISVAEPYECVEKVNFRLHPRKTTPHRSPMF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00160 212 MobiDBLite consensus disorder prediction 108 132 - -
Rops1g00160 212 Pfam PLATZ transcription factor 59 155 IPR006734 -
Rops1g00160 212 ProSiteProfiles Zinc finger B-box type profile. 14 57 IPR000315 GO:0008270
Rops1g00160 212 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 211 - -
Rops1g00160 212 MobiDBLite consensus disorder prediction 163 184 - -
Rops1g00160 212 MobiDBLite consensus disorder prediction 101 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00160 Rops-Chr1 4837942 4839766 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Rops1g00160 PLATZ 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00160 - - gmx:100820425 294.278