Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00146 ATGGAGACTCAAGTTCAAGCAACATTGGATCTAGAGAGTTGTGTGACACATGACAGGTTGGAGATGCAGTCACCAGTGAAATCTGAAAGCTATGAACTTCAACACCCACGTTCAGTTTCATGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCGACCAAAGTAGCACAATCATGCCCCAAGCCAGTAGCAACAAAAGCAAAGAGAAAGCGAAAGAGAACAAGACCAGCAAAGAACAAGGAAGATGTGGAGAACCAATGCATGACCCACATTGTCGTTGAACGAACCGGTTCAGGCAGGCACCATCCTCGTGCTGTCTTCGTGGATCTGGTCCTTTGTGAAATCATGCATGCAATGTGGAAACCTCAAAATATCAGGATCATGCTACTTGCCCTCATCCTGATGAAGAGGAAACCGGTGGAGAGCTTTGGATGGTTTAGGACCTCTTCGGACGCACACCTCGCATGGCCATGCAACTTGTGTGGCAACATGACTCTCAAAAACCCTACACTCTCTGCCCCTCACCCTCTGTGCCGCCGTGTCCCTTTGATTTTTGGTTTCTCAATGGCGACACAGTCACTGGACGAGGAAACAGCGAAGAAAGCGATACAACAGGTGGAGTTTTACTTCAGTGATAGCAACCTTCCCAGGGACATTTTTTTGAGGGAAACTGTCACTGAAAGCGAAGATGGCATGATCTCAAAAGATGGGAACAAAGTTGGCAGGACAACTGAACTTCCAAAGCCAGAAGAGGTAATTGAGAAAGTAGAGATAAGAACAATTGCCACATCACCATTTGAATTTAACGTGAACCTTGAAGATGTGGAGACATTCTTTGGTCAATGTGGCAAGGTTAACAGTGTTCGGTTGCCCCGTCACGTTGGAGACAAAAGGTTCTTCTGTGGCACTGCCCTTGTTGAGTTCTCATCAGACGAAGAAGTGGAAAAAGTTATGAAGCAAAGGTTGATCTATGCGGGGGCTGAGTTAGAATTAAAGCCAAAGAAGGACTTTGATGCAGAGAGAGAGAAGGAAGAGCAGTGTTTCTTTTCGTGGTACAGCCCAACACGGTCTCTTCACTCCAAGCTGAAGCTGGCAAGTGACAGGAGCGGTTTTAAGTCATTTGCCTTGGGCACCCATACAAGCTCAAGTTGCACCCATAATCAGCAAAGTTCACGTGAAGCACCACTTATGCACCACGTTGGGGTGGTCTCATTGTTGCTTGATGATCGTGAGCCTGGGAGTGTTCACTTCCTGACAAGGGAAATTCACATTCTGCGTAAGCTTGATCATCCAGATGTCATAAAACTGGAAGGCCTGGTTACATCAAGGATGTCGTGCAACTTATACTTTGTTTTTGAGTACATGGAGCATGGCCCGGCTGGGCTTGCATCACGTCCTAGACTGAAGTGTAAAGAAGCACAGGTTAAGTGTGGCATGCAGCAATTTTTACGTGGACTTGATCACTGCCACAGCCGTGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTAGTTGACAACAATGGAATCTTAAAAAACTGCAGACTTTGGTTTGGCAAACTTTTTCGATCCCAATAA 1584 0.4621 METQVQATLDLESCVTHDRLEMQSPVKSESYELQHPRSVSCVEKVSYECNQEPTKVAQSCPKPVATKAKRKRKRTRPAKNKEDVENQCMTHIVVERTGSGRHHPRAVFVDLVLCEIMHAMWKPQNIRIMLLALILMKRKPVESFGWFRTSSDAHLAWPCNLCGNMTLKNPTLSAPHPLCRRVPLIFGFSMATQSLDEETAKKAIQQVEFYFSDSNLPRDIFLRETVTESEDGMISKDGNKVGRTTELPKPEEVIEKVEIRTIATSPFEFNVNLEDVETFFGQCGKVNSVRLPRHVGDKRFFCGTALVEFSSDEEVEKVMKQRLIYAGAELELKPKKDFDAEREKEEQCFFSWYSPTRSLHSKLKLASDRSGFKSFALGTHTSSSCTHNQQSSREAPLMHHVGVVSLLLDDREPGSVHFLTREIHILRKLDHPDVIKLEGLVTSRMSCNLYFVFEYMEHGPAGLASRPRLKCKEAQVKCGMQQFLRGLDHCHSRGVLHRDIKGSNLLVDNNGILKNCRLWFGKLFRSQ* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00146 527 SMART la 197 262 IPR006630 -
Rops1g00146 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 345 IPR000504 GO:0003723
Rops1g00146 527 SUPERFAMILY "Winged helix" DNA-binding domain 196 235 IPR036390 -
Rops1g00146 527 Pfam La domain 204 235 IPR006630 -
Rops1g00146 527 CDD RRM1_La 261 333 - -
Rops1g00146 527 ProSiteProfiles La-type HTH domain profile. 193 288 IPR006630 -
Rops1g00146 527 MobiDBLite consensus disorder prediction 60 82 - -
Rops1g00146 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 320 IPR000504 GO:0003723
Rops1g00146 527 Gene3D Transferase(Phosphotransferase) domain 1 456 516 - -
Rops1g00146 527 Gene3D - 253 348 IPR012677 -
Rops1g00146 527 Pfam Protein kinase domain 419 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00146 527 Gene3D - 189 247 IPR036388 -
Rops1g00146 527 SUPERFAMILY Protein kinase-like (PK-like) 411 514 IPR011009 -
Rops1g00146 527 PANTHER CELL DIVISION PROTEIN KINASE 416 516 - -
Rops1g00146 527 Gene3D Phosphorylase Kinase; domain 1 419 455 - -
Rops1g00146 527 SMART serkin_6 353 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00146 527 SUPERFAMILY RNA-binding domain, RBD 252 336 IPR035979 GO:0003676
Rops1g00146 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Rops1g00146 527 ProSiteProfiles Protein kinase domain profile. 361 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00146 Rops-Chr1 4341764 4343825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00146 401 514 Core Cell Cycle Gene Families AT5G10270 44.531 4.77e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops1g00146 Pkinase 8.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00146 K11090 - gmx:100792984 234.958