Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00132 ATGTCTTGCGAGGGTAGGAATCAGAGAATGTCCAAGAGGCATTTAGAGGTGCTTGATATCATATTGAGGCAGCAGGCTGCTAAGCAAGGTTTCCTGTTTGTACGCCAATCTCTCTTTCACAACGATCCGAGGATTTTTGCTGATGAAGGAGGTGGTCTAGAGTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAATGGCCTTTCTCTTAATATAGATGTCTCCACTACGATGATAATTCGGCCTGGGCCTGTGGTGGACTTCTTAGTTGCCAATCAAAACGTGAGAGATCCTTTTTTCACTTGA 309 0.4369 MSCEGRNQRMSKRHLEVLDIILRQQAAKQGFLFVRQSLFHNDPRIFADEGGGLECRGFHSSFRTTQNGLSLNIDVSTTMIIRPGPVVDFLVANQNVRDPFFT* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00132 102 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 96 - -
Rops1g00132 102 SMART DUF1785_2 32 83 IPR014811 -
Rops1g00132 102 Pfam Argonaute linker 1 domain 34 81 IPR014811 -
Rops1g00132 102 SUPERFAMILY PAZ domain 11 94 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00132 Rops-Chr1 3804628 3804936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00132 1 90 Eukaryotic Initiation Factors Gene Family AT1G48410 40.217 9.15e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00132 K11593 - jre:108989696 150.599