Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00131 ATGAAAGGAGTGCTGATAGAACCTCCCTTCGATGTATTCGAAGAAAATGATCAGTTTCGGCGTGCCCCACCAGTGGTTCGAGTGGAGAAAATGGTGGAGACCATTCAGTCCAAACTTCCTGGAGCTCCTCGGATCAACGACCAATCCCTTACGAATATTCTGTTGAAGATCAATGACAAGCTTAGTGGGTTGAATTCAATGTTAGGTGTCGAACATTCTCCTTCCATTCCTGTTGTTTCCGGGGTCCCCACCATCATTCTTGGCATGAATATGTCTCATGGCTCACCAGGGCAATCAGATATTCCTTCGATCGCAGCGGTCGTTAGCTCTAGACAGTAG 339 0.472 MKGVLIEPPFDVFEENDQFRRAPPVVRVEKMVETIQSKLPGAPRINDQSLTNILLKINDKLSGLNSMLGVEHSPSIPVVSGVPTIILGMNMSHGSPGQSDIPSIAAVVSSRQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00131 112 MobiDBLite consensus disorder prediction 91 112 - -
Rops1g00131 112 SUPERFAMILY Ribonuclease H-like 48 110 IPR012337 -
Rops1g00131 112 Gene3D - 73 112 IPR036397 GO:0003676
Rops1g00131 112 Pfam Piwi domain 44 111 IPR003165 GO:0003676
Rops1g00131 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 45 111 - -
Rops1g00131 112 Gene3D - 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00131 Rops-Chr1 3803962 3804422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00131 44 111 Eukaryotic Initiation Factors Gene Family AT5G43810 47.059 1.74e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00131 K11593 - mof:131147837 171.785