Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00129 ATGAAAATGGATCCCCAGAAGCTGCAAAACTCGTCCAAAACTGCAACAGATTCAGCATCGCAACCCAATCCCAGGTTTCGGGGACAAGAAACTGCAAGGGAGAGGGGTCAGGAGCCAACTTCCGCAAGAAAAGTTCAGAAGGCGGATCGCGAGAAACTCAGGAGGGATCGATTGAATGACCATTTTCATGAGTTGGGAAACACTTTAGATCCTGATAGACCAAGAAATGACAAGGCAACTATCCTTACGGATACAATCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGACTGAAAATGGAGCATAAAGGACTTTCTGAAGAGACCCGTGAATTAATGCAAGAAAAGAATGAACTCCGAGAAGAGAAGGCATCTTTAAAATCTGATATAGAAAATCTTAATGCCCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATGGACTGCAATTGACCAATCTGTTGTCACGAGTCCACCTTATTCATATCCAGTTCCCATACCCATCCCTCCCAGTCCAATTCCCATGCACCCATCTCTTCAACCTTTTCCTTTCTATGGAAATCAAAATCCTGGCCACATTCCTAGTCCCTGTTCAATGTACATCCCATTCTCAGATCCTCCTAACCCCCCAGTTGAGCTGCCATCAGCTCATTATGCCTCTACGTCCCATGTGTCTAACCAGAAAGAGTCCCGAAGCAAGTCCCCATGTCATAAAAGGTCCATTGATTCTGAAAGATGTAGTGATTCTCAAGATGTGGCTACAGATCTTGAACTTAAGATGCCTGGATCATCAGTACAACAGGATTCCACTTCTGGAGGAAGGAAAGGTAAGCATTCAGTGATGAAGGATAGAATCATCACAGATGGGAGTGCTTCGAGCCGGTATTCTTCATCTCAAGGACTTCAAGATAGCTCCAACAGCGTCGGTGACATCCCAAAGGATGATAATTGA 954 0.4434 MKMDPQKLQNSSKTATDSASQPNPRFRGQETARERGQEPTSARKVQKADREKLRRDRLNDHFHELGNTLDPDRPRNDKATILTDTIQMLKDLTAEVNRLKMEHKGLSEETRELMQEKNELREEKASLKSDIENLNAQYQQRVRIMFPWTAIDQSVVTSPPYSYPVPIPIPPSPIPMHPSLQPFPFYGNQNPGHIPSPCSMYIPFSDPPNPPVELPSAHYASTSHVSNQKESRSKSPCHKRSIDSERCSDSQDVATDLELKMPGSSVQQDSTSGGRKGKHSVMKDRIITDGSASSRYSSSQGLQDSSNSVGDIPKDDN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00129 317 Coils Coil 82 137 - -
Rops1g00129 317 PANTHER TRANSCRIPTION FACTOR BHLH121 15 314 IPR044579 GO:0003700|GO:0006879
Rops1g00129 317 MobiDBLite consensus disorder prediction 231 253 - -
Rops1g00129 317 MobiDBLite consensus disorder prediction 1 27 - -
Rops1g00129 317 SMART finulus 48 98 IPR011598 GO:0046983
Rops1g00129 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 112 IPR036638 GO:0046983
Rops1g00129 317 Gene3D - 41 125 IPR036638 GO:0046983
Rops1g00129 317 MobiDBLite consensus disorder prediction 261 275 - -
Rops1g00129 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 92 IPR011598 GO:0046983
Rops1g00129 317 MobiDBLite consensus disorder prediction 290 310 - -
Rops1g00129 317 MobiDBLite consensus disorder prediction 212 317 - -
Rops1g00129 317 MobiDBLite consensus disorder prediction 28 77 - -
Rops1g00129 317 CDD bHLH_AtILR3_like 47 121 - -
Rops1g00129 317 MobiDBLite consensus disorder prediction 1 77 - -
Rops1g00129 317 Pfam Helix-loop-helix DNA-binding domain 43 92 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00129 Rops-Chr1 3777997 3781620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00129 40 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.738 2.49e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g00129 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00129 - - gmx:100818281 400.593