Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00127 ATGGCAACCCATACCACTTCTAGAATCTATCTCATAAGGTACATCTCAGCCATGCTTGGTTTTGCAGCAATAGTTGCAGCCCTTCTCTATTTCCTACACATTTTCCATCAAAGACAATGTTGCAAACACCCTCTCATGACAAACTATCCCATCCTTGGCATGTTACCACAACTCCTCTGGAACATGTGGCGTTTCCATGATTTTTTGACTGAGTTATTGAAAAGAAATGGGGGCACTGGGGAGTTCATAGGACCTTGGTTTACCAAAATGAACTTCATGATCACTAGTGACCCCATTAATGTGCACCACATTATGAGCAAGAGTTTTGACAATTATGTTAAAGGGCCTGAGTTTCGTGAGATTTTTCAACCTTTCGGAGAAGGGATATTCACCACTGACTCAGAGACATGGAAGTACAACAGGTCCCTTCTCCATTCTATGTTTAAAAACAAAAGCTTTGAAGTGTTTCTAGAGAAAACCATTCAGAAGAAGGTGGAGAACAGGCTATTACCTTTATTAGATCATGTACAACAACAAGGGTCGGTGGTGGATCTACAAGAAGTCTTCAACCGGTTCACATTTGATAACATATGCTCCATAATTCTAGGATATGATCCTAATTGTCTTTCCATTGATTTTCCAGAAGTTGCTTTCGAGAAGGCTTTTAATGAAGCAGAAGAGTCCATATTCTATAGACACATGGTGCCAAAAAGTGTGTGGAAGTTGCAAAAGTGGCTTCACATTGGTCAGGAGAAGAAGATGAAAGAAGCATGTAAAACATTTGACAAATTCCTATATGAATGTATAGCATCCAAGAGAGAAGAGCTAAGCATTCGGTGTAGCCAAAATGAAATGGTTGAATCTCAAGTTGACTTGCTAACAACTTTGATGAGGGAAGATAAGGGACAAGTACATGATGACAAGTTTCTAAGGGATGCTGTATTCAATCTTTTTGTAGCAGGGAGAGATACCATAACTTCAGCTCTTACATGGTTCTTCTGGCTTGTTGCTACAAACCCATTAGTGGAAGCCAAGATCCTTGAAGAGATCAAAGTTAATTTTGGGTCCAAGAAAGGGGTTTTAAGTGCGGAGGAGGTGAAAAGTCTAGTTTATCTTCATGGTGCTATATGTGAATCTCTTCGCCTTTTTCCTCCTATACCTTTTGAGCGCAAACAAGCAATCAAAGGTGACATACTTCCAAGTGGTCACCCAATCAATCCGAATAAGATGATATTATTTTCTTTGTATACAATGGGAAGGTTTGAAGAAATATGGGGGAAAGATTGCTTGGAATTCAAGCCAGAGAGATGGATCTCTGAGAGAGGAAGTGTTGTTCATGCACCATCTTACAAATTCATTAGTTTTAATGCAGGACCAAGGACTTGCTTGGGAAAAGACTTATCCTTCATACAAATGAAGATGGTTGCAACTGCTATTTTGAGCAACTACTGTATCCAACCAGTGGAAGGTCATGTTGCTACCCCAAGCCTTTCAATTGTACTTCTCATGCAGCATGGTTTGAAGGTTAGGGTAGCAAAAAGAGAAATATAG 1551 0.3978 MATHTTSRIYLIRYISAMLGFAAIVAALLYFLHIFHQRQCCKHPLMTNYPILGMLPQLLWNMWRFHDFLTELLKRNGGTGEFIGPWFTKMNFMITSDPINVHHIMSKSFDNYVKGPEFREIFQPFGEGIFTTDSETWKYNRSLLHSMFKNKSFEVFLEKTIQKKVENRLLPLLDHVQQQGSVVDLQEVFNRFTFDNICSIILGYDPNCLSIDFPEVAFEKAFNEAEESIFYRHMVPKSVWKLQKWLHIGQEKKMKEACKTFDKFLYECIASKREELSIRCSQNEMVESQVDLLTTLMREDKGQVHDDKFLRDAVFNLFVAGRDTITSALTWFFWLVATNPLVEAKILEEIKVNFGSKKGVLSAEEVKSLVYLHGAICESLRLFPPIPFERKQAIKGDILPSGHPINPNKMILFSLYTMGRFEEIWGKDCLEFKPERWISERGSVVHAPSYKFISFNAGPRTCLGKDLSFIQMKMVATAILSNYCIQPVEGHVATPSLSIVLLMQHGLKVRVAKREI* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00127 516 Gene3D Cytochrome P450 29 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Rops1g00127 516 Pfam Cytochrome P450 46 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PANTHER CYTOCHROME P450 34 509 - -
Rops1g00127 516 CDD CYP86A 81 507 - -
Rops1g00127 516 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00127 516 SUPERFAMILY Cytochrome P450 47 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00127 Rops-Chr1 3704482 3706251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00127 17 514 Cytochrome P450 AT2G23180 47.162 4.85e-171 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00127 - - gmx:100779590 781.941