Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00102 ATGTCTGTACCATTTATTTTCTCTTGGAAAGTGAGTAGTGCCCCGTTTGATGAATCCGAAATGGGGTTTTATCAGATCCTCGAGCAAGATCATTCTGGGGATTTTTTTAACATTAAGGTCCATGTTAAACATCGACCATACTTCACTCAGTCTCAAACACAATTACCTCCACTCTTTGGTTGGTTTTCACATGAGCACTCCATGCTGGTACCTAGCCATGAATTATTTGAAAACGGTTCATCATACATGCAAATGTACTTTCCTGATCATATCATTCCCCATGAATTGATTCCCTCAATGATGCCAGAAGTTCTAACATACGCCAATGACTTTGCTCAAAATTGCCATTCTGGGGATCATTATGAAAGTCCCCACTTTCGTTTGTTCACTTTGGTTTTGGATATTCTTATTAGGAAATTACATGATGAGCATGATGATGATGAGATCACCAACATGATCATGAGGGAGTCCATGGGAGAGGTTGATAGGGTTCCTGTCTCAAAGACTGCCACTGAATCAATCAAGAAAGTGAAGCTTAAAAAAGATAGTGTTAAGGAAAGTTGTAGGATTTGTCTAACGGAGTTTGATGATGGCATAGAGGTTTCATCAATGCCTTGTAACCATGTGTATCATCAAGAATGTCTCACTCTGTGGCTAAAAACGAGTCATGTGTGTCCTTTGTGTCGTCACCCTATGCCGACTTCAATGACCAACTCTTGA 720 0.4 MSVPFIFSWKVSSAPFDESEMGFYQILEQDHSGDFFNIKVHVKHRPYFTQSQTQLPPLFGWFSHEHSMLVPSHELFENGSSYMQMYFPDHIIPHELIPSMMPEVLTYANDFAQNCHSGDHYESPHFRLFTLVLDILIRKLHDEHDDDEITNMIMRESMGEVDRVPVSKTATESIKKVKLKKDSVKESCRICLTEFDDGIEVSSMPCNHVYHQECLTLWLKTSHVCPLCRHPMPTSMTNS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00102 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 110 233 - -
Rops1g00102 239 SMART ring_2 188 228 IPR001841 -
Rops1g00102 239 SMART ringv_2 187 229 IPR011016 GO:0008270
Rops1g00102 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Rops1g00102 239 Pfam Ring finger domain 187 229 IPR001841 -
Rops1g00102 239 SMART FANCL_C_2 184 237 - -
Rops1g00102 239 SUPERFAMILY RING/U-box 187 235 - -
Rops1g00102 239 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00102 Rops-Chr1 3040775 3041494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00102 154 233 C3H Transcription Factor Family AT1G18760 39.286 1.72e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00102 - - psat:127082836 226.483