Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00077 ATGGCAGCCACCGCCTTGCTCCGCTTTCTCCGTCGCCGCGATGTTGCCTCTGTTTCCTTCTCTACCTTTTGCTCGGGCAAGGAGAAAGAGCAGGCACTTTCTTATTTGGGAGGAAAGGAATATAAGATTGCCATGGAAGAAAACAAGAAGTCGATGCATAAGGAGATAGAAAGACAAAGAAGGCAAGAGATGGGGAAAGTCTGCAACACCCTTAGATCTCTTCTACCTTTGGAATATATCAAGATTAGAAATTTGAAAGCCATTTGGGGTGCTTTTATTGCATATCTTGATGACCATCAACAGGGAAAACGATCAACATCTGATCATATGCATGAAGCTATGAATTATATCAACCACCTACAAGACAAGGTGAAGCAATTGCAAGCCAAGAGGGATGAGTTAACAAAAGTGTCTAATTTGAGTACTATTGACCCTTATGAGAATGGAAGCTCAACAACCCATCTTCTACCCTTTGTTATTGTTCATCCTTGCCCTGGAGGCCTTGAAATTATGTGCAGCTACAGCTTCAAGAATTGTGTGTTTCCTTTGTCAAGAGTTCTAGACATGTTACTTAAAGAAGGGCTTAATGTGGTAACCAGTACTTCCACCAAAATAAATGGCAGATTCATACACACTATACAATCAGAGGAGATCATTACTGATATCGCATCAAAGGTTGCTATTTTTTTCCCTTTCTGGGAGAAATCAAGATTTTTTCCTTCACCTTTGCATGCTTTCTTCATTGATCATTTTGTTCTAAAGAGTAATTATAAGAAGGAAGAAAGAGTGGTAAAAGTTGAAGGAGGCAATGGAGGTGATGGGGGAGACATGAGTTTGAAGGATATAACGTTCACACTAAAGGCAATGCAGAAGCATTTTGCTAAGATTGATCATGACTTTAACAACATTAGGGACGAACTTGAGGTGATTAGGAATTCTCAACCATCAAATTCCTCAAATCCAAGGTGA 969 0.3994 MAATALLRFLRRRDVASVSFSTFCSGKEKEQALSYLGGKEYKIAMEENKKSMHKEIERQRRQEMGKVCNTLRSLLPLEYIKIRNLKAIWGAFIAYLDDHQQGKRSTSDHMHEAMNYINHLQDKVKQLQAKRDELTKVSNLSTIDPYENGSSTTHLLPFVIVHPCPGGLEIMCSYSFKNCVFPLSRVLDMLLKEGLNVVTSTSTKINGRFIHTIQSEEIITDIASKVAIFFPFWEKSRFFPSPLHAFFIDHFVLKSNYKKEERVVKVEGGNGGDGGDMSLKDITFTLKAMQKHFAKIDHDFNNIRDELEVIRNSQPSNSSNPR* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00077 322 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 47 222 - -
Rops1g00077 322 Pfam Helix-loop-helix DNA-binding domain 49 121 IPR011598 GO:0046983
Rops1g00077 322 Coils Coil 110 137 - -
Rops1g00077 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 137 IPR036638 GO:0046983
Rops1g00077 322 CDD bHLH_AtORG2_like 49 142 - -
Rops1g00077 322 Gene3D - 39 137 IPR036638 GO:0046983
Rops1g00077 322 SMART finulus 54 126 IPR011598 GO:0046983
Rops1g00077 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 120 IPR011598 GO:0046983
Rops1g00077 322 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00077 Rops-Chr1 2252351 2256620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00077 53 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 38.462 3.81e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g00077 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00077 - - ccaj:109791323 232.646