Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g00054 | ATGACCAAACCCAACACTTTCTTTCACAATCTCATAAAGCCCTTCAAATTCGGATCCAGTAAAGAGGGACAGAACCAAGAGGAAATACAGAACTTAGCTGCACAGGAGCAAAAGACCTTTTCCTATGAAACATTGGTTGCTGCTACAAAGAACTTTCACATTCTTAACAAGCTTGGTGAGGGAGGCTTTGGATCCGTCTACAAGGGGAAGTTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACGACGCTCAACTCAAGGGAAGCCACAGTTCATGAACGAGGCCAAGTTGTTGACTCGTGTTCAGCACCGTAATGTGGTTAATTTGTTTGGTTATTGTATCCATGGCTCAGAGAAGCTTCTTGTTTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGCTTCTATTCAGATCCCACAAGAAAGAACAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGGGTGGCAAAAGGGTTGCTTTATCTTCACGAAGACTCACATAATTGTATAATCCATCGTGATATAAAGGCTGCTAATATCTTACTTGATGAAAAATGGGTACCCAAAATTGCTGACTTTGGTTTGGCTCGTTTATTCCCTGAAGATCAAACACGTGTGAATACACGTGTGGCTGGAACTAGCGGGTATATGGCTCCGGAGTACATGATGCATGGACATCTATCTGTGAAGGCTGATGTGTTTAGCTATGGAGTTTTGGTGTTGGAGTTAATCACTGGCCGTCGAAACTCGTCGTTTGATTTGGACAATTCACATAATCTCCTGGACTGGGCATACAAGCTTTACAAGAAAGGGAGGGGCATAGAAATGGTGGACTCCACAATGGCATCTAGTGTGGTAACTGAGCAAATAGAAATGTGCATTCAACTGGGTCTGCTATGCACACAAGCTGATCTGCAACTGCGTCCAACAATGGGGCGTGTGGTGGTGATGCTTTCAAAGAAGACACGGCACATGGAAGAACCAATGAGACCAGGAATTCCTGGCTCCAGATACAGAAGATTACCTCGCAGGCCTTTTCCATCCTCTTCTTCTTCTACCACTAATGCTGCAGCAACTGATGATTATGATGATGACTCTCCTTCTCACACTTTTGATTCTAGCAATTGTGGCACCACTTCTTCTGCCACAAGAACAAGATCTACTACTGCAGAGGTAGTAGACCCACGAGGGAAACGTCCAATGTAA | 1215 | 0.4395 | MTKPNTFFHNLIKPFKFGSSKEGQNQEEIQNLAAQEQKTFSYETLVAATKNFHILNKLGEGGFGSVYKGKLNDGREIAVKKLSRRSTQGKPQFMNEAKLLTRVQHRNVVNLFGYCIHGSEKLLVYEYVPRESLDKLLFRSHKKEQLDWKRRFDIINGVAKGLLYLHEDSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDQTRVNTRVAGTSGYMAPEYMMHGHLSVKADVFSYGVLVLELITGRRNSSFDLDNSHNLLDWAYKLYKKGRGIEMVDSTMASSVVTEQIEMCIQLGLLCTQADLQLRPTMGRVVVMLSKKTRHMEEPMRPGIPGSRYRRLPRRPFPSSSSSTTNAAATDDYDDDSPSHTFDSSNCGTTSSATRTRSTTAEVVDPRGKRPM* | 405 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g00054 | 404 | Gene3D | Phosphorylase Kinase; domain 1 | 16 | 127 | - | - | |
Rops1g00054 | 404 | Pfam | Protein kinase domain | 52 | 316 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops1g00054 | 404 | MobiDBLite | consensus disorder prediction | 348 | 364 | - | - | |
Rops1g00054 | 404 | CDD | STKc_IRAK | 58 | 323 | - | - | |
Rops1g00054 | 404 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 173 | 185 | IPR008271 | GO:0004672|GO:0006468 | |
Rops1g00054 | 404 | SMART | serkin_6 | 52 | 328 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops1g00054 | 404 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 128 | 329 | - | - | |
Rops1g00054 | 404 | ProSitePatterns | Protein kinases ATP-binding region signature. | 58 | 81 | IPR017441 | GO:0005524 | |
Rops1g00054 | 404 | MobiDBLite | consensus disorder prediction | 372 | 393 | - | - | |
Rops1g00054 | 404 | Gene3D | Transferase(Phosphotransferase) domain 1 | 128 | 333 | - | - | |
Rops1g00054 | 404 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 16 | 127 | - | - | |
Rops1g00054 | 404 | ProSiteProfiles | Protein kinase domain profile. | 52 | 330 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops1g00054 | 404 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 26 | 371 | - | - | |
Rops1g00054 | 404 | MobiDBLite | consensus disorder prediction | 327 | 404 | - | - | |
Rops1g00054 | 404 | SUPERFAMILY | Protein kinase-like (PK-like) | 37 | 359 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g00054 | Rops-Chr1 | 1573293 | 1581247 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g00054 | 20 | 336 | Receptor kinase-like Gene Family | AT4G11530 | 49.375 | 1.38e-107 | 329 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Rops1g00054 | Pkinase | 6e-51 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g00054 | - | - | gmx:100811523 | 605.134 |