Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00054 ATGACCAAACCCAACACTTTCTTTCACAATCTCATAAAGCCCTTCAAATTCGGATCCAGTAAAGAGGGACAGAACCAAGAGGAAATACAGAACTTAGCTGCACAGGAGCAAAAGACCTTTTCCTATGAAACATTGGTTGCTGCTACAAAGAACTTTCACATTCTTAACAAGCTTGGTGAGGGAGGCTTTGGATCCGTCTACAAGGGGAAGTTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACGACGCTCAACTCAAGGGAAGCCACAGTTCATGAACGAGGCCAAGTTGTTGACTCGTGTTCAGCACCGTAATGTGGTTAATTTGTTTGGTTATTGTATCCATGGCTCAGAGAAGCTTCTTGTTTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGCTTCTATTCAGATCCCACAAGAAAGAACAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGGGTGGCAAAAGGGTTGCTTTATCTTCACGAAGACTCACATAATTGTATAATCCATCGTGATATAAAGGCTGCTAATATCTTACTTGATGAAAAATGGGTACCCAAAATTGCTGACTTTGGTTTGGCTCGTTTATTCCCTGAAGATCAAACACGTGTGAATACACGTGTGGCTGGAACTAGCGGGTATATGGCTCCGGAGTACATGATGCATGGACATCTATCTGTGAAGGCTGATGTGTTTAGCTATGGAGTTTTGGTGTTGGAGTTAATCACTGGCCGTCGAAACTCGTCGTTTGATTTGGACAATTCACATAATCTCCTGGACTGGGCATACAAGCTTTACAAGAAAGGGAGGGGCATAGAAATGGTGGACTCCACAATGGCATCTAGTGTGGTAACTGAGCAAATAGAAATGTGCATTCAACTGGGTCTGCTATGCACACAAGCTGATCTGCAACTGCGTCCAACAATGGGGCGTGTGGTGGTGATGCTTTCAAAGAAGACACGGCACATGGAAGAACCAATGAGACCAGGAATTCCTGGCTCCAGATACAGAAGATTACCTCGCAGGCCTTTTCCATCCTCTTCTTCTTCTACCACTAATGCTGCAGCAACTGATGATTATGATGATGACTCTCCTTCTCACACTTTTGATTCTAGCAATTGTGGCACCACTTCTTCTGCCACAAGAACAAGATCTACTACTGCAGAGGTAGTAGACCCACGAGGGAAACGTCCAATGTAA 1215 0.4395 MTKPNTFFHNLIKPFKFGSSKEGQNQEEIQNLAAQEQKTFSYETLVAATKNFHILNKLGEGGFGSVYKGKLNDGREIAVKKLSRRSTQGKPQFMNEAKLLTRVQHRNVVNLFGYCIHGSEKLLVYEYVPRESLDKLLFRSHKKEQLDWKRRFDIINGVAKGLLYLHEDSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDQTRVNTRVAGTSGYMAPEYMMHGHLSVKADVFSYGVLVLELITGRRNSSFDLDNSHNLLDWAYKLYKKGRGIEMVDSTMASSVVTEQIEMCIQLGLLCTQADLQLRPTMGRVVVMLSKKTRHMEEPMRPGIPGSRYRRLPRRPFPSSSSSTTNAAATDDYDDDSPSHTFDSSNCGTTSSATRTRSTTAEVVDPRGKRPM* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00054 404 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Rops1g00054 404 Pfam Protein kinase domain 52 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00054 404 MobiDBLite consensus disorder prediction 348 364 - -
Rops1g00054 404 CDD STKc_IRAK 58 323 - -
Rops1g00054 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Rops1g00054 404 SMART serkin_6 52 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00054 404 FunFam Cysteine-rich receptor-like protein kinase 2 128 329 - -
Rops1g00054 404 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Rops1g00054 404 MobiDBLite consensus disorder prediction 372 393 - -
Rops1g00054 404 Gene3D Transferase(Phosphotransferase) domain 1 128 333 - -
Rops1g00054 404 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Rops1g00054 404 ProSiteProfiles Protein kinase domain profile. 52 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00054 404 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 371 - -
Rops1g00054 404 MobiDBLite consensus disorder prediction 327 404 - -
Rops1g00054 404 SUPERFAMILY Protein kinase-like (PK-like) 37 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00054 Rops-Chr1 1573293 1581247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00054 20 336 Receptor kinase-like Gene Family AT4G11530 49.375 1.38e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops1g00054 Pkinase 6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00054 - - gmx:100811523 605.134