Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00049 ATGTTTGCGTCCACTCTCCTAACTCCCTCTAACTTAAACCCTTCACATTTCGTGCCCCTAACAACCACCAGAGTCTCAGAAACTCATCCACGAAGCAGAGTCACAATCTTTTCCAAATCAAACTCCAAACTTGCCCTCGTTGCTAGGCTCAGTAGTAACGGTCCTGACGGCTCCGTTGATGCTACCTCACTTCAAGGCATTGATGCTGTAGAAAGTGCATCTTCTTCTGGCCTTGGTGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCCTTGATCATGATCCTCTAGATAGAGAACAAGCTATAATTGCTCTCTGGAAATATTCACTTGGTGGAAAGAAATGTATTGACAATATAATGCAGTTTCCCGGTTGTATTAATCTTGTTGTCAACCTTCTTAGATCGGATTCTAGTTCAGCATGTGAGGCAGCTGCAGGCCTTCTTCGATCGCTATCTTCGGTCAATCTATATAGGAATTCTGTAGCAGATAGCGGAGCAATAGAAGAGATCAATAGATTGCTGAGGCAATCCTCCTTGGCTCCTGAGGTAAAGGAGCAGAGTTTGAGTACATTGTGGAATCTATCTGTTGATGAAAAGCTCTGCATTAAAATTGCAAAGAGTGACACTCTGGTGCTAGCTATTAAATACCTTGACGATGAGGATATGAAAGTGAAGGAAGCTGCAGGGGGCATTTTGGCAAATTTAGCGTTGAGCCGTGTTAACCATGACATCATGGTTGAAGCAGATGTTATACCAAAATTGGCAAAGTTCTTAACATCTAACTCGGAAGCATCTAAAGTCATTAGAAAGGAAGCAAGGAATGCATTGCTGGAACTTGTTAAGGACGAGTATTATAGAATTCTTGTTATTGAGGAAGGTTTGGTTCCTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATTCACCCCAGGTTTTCATTCGTGGCCCACATTACCAGATGGTACAGAAATTGAAAGGAATTCCAGACAACCTTCCAGATTTGGTGCATCAGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACATGGAGGAAGCAAAAATCAATGCAATTGTTGGACGAACACAACAGCGATTTCTTGCTCGTATTGGGGCTATAGAAATGGAAGAAACGACAATACCTCATTCTGAATGCTCAAATGATCAGCGGCTTACACTTTTACATTGGATGGATGGTGTTGCTCGTTTAGTATTGATACTAGAACTAGAAGATAAGTCGGCAATATTAAGAGCTTCAGAGTCAATTGCTAGTGCATGTATCAATGAACATATGCGTATTGCATTTAAGGAGGCTGGAGCAGTTAATCACTTAGTATGGCTTTTGTCCTGTGATGATAATGCAGTCCAGTTGGCAGTAATCCAAGCTTTGGAAAAGCTGTCTGCAAGCAATGTTGTTTGCCGGGTAATTGAAGCTGAGGGTGGTTTAGGTCCTTTAGTTAGTATTTTGAAATGCCCAGAGATAGCTGGAACTATTGTGGAAAAGTCTTTGAACATACTTTCTCGGATATTAGACCCCAGTAAGGAGATGCAATTGAAGTTTTATGATGGATCAGTTAATGGATCCCAGAAGGCATTTGGTGGAGCCAAAAGTGATGGTGTTTCGACAGGATTAAGTAGTGCTGAGGAAGCCGTTTCAAAAACAAACACCAGGAATTATATACTGGATTCTGTTTTCATTACACACCTTGTTGAGATTCTAAAGTCCTCTTCACCCAGATTACAAGAAAAGGCTGCATCTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTGGCTCCAATTTTATCTGTGGATGTTGAAAATGGTCTCAATTCTGCTTTTCAACAAAAAAATTTGAAAATTTCAGCGGACATGGAATCTGATGCAGAAGATCAGTTTTCAGAAGCATATGCTATCGAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTTACTGACAAGACTACTTGATTGTGAGCAGTTTCGTCACAAAATAAATTTCTCCCATTTCATTGATATGCTTCGTGAAATCCTCAGGTCCAGTATTCCCCTCCACAATAAAGAATGGGTAGCTGCTTGCCTAGTTAAACTAGGTTCTCTCTCTGGTAACAACTTGAGTTTTTATCCGATCAACATGGAAGTTACACTTTATGAGACAATCCCAAGACTTGTTGAACAGATCAAAACTTCATTCTCCCCAGAAGCACAGGAAACTGCTGTTGTGGAACTTAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGGAGCTATTATTTCTGGGGAGGCAATATATCCATTGGTGAAGCTGATTGAAGAAGGCAGTGAAAGGGCTGTTGAAGCAAGCTTGGCAATACTGTATAATCTGAGTATGGACAGTGAGAACCATTCAGCACTTGTGGCAGCTGGAGCAGCCCCAGCCTTGAGAAGAATTGTTCAATCACAGAGACCACAGTGGGAACGGGCACTTCATTTACTCAGGAGTTTGCAAATGTGA 2514 0.4137 MFASTLLTPSNLNPSHFVPLTTTRVSETHPRSRVTIFSKSNSKLALVARLSSNGPDGSVDATSLQGIDAVESASSSGLGDGYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKKCIDNIMQFPGCINLVVNLLRSDSSSACEAAAGLLRSLSSVNLYRNSVADSGAIEEINRLLRQSSLAPEVKEQSLSTLWNLSVDEKLCIKIAKSDTLVLAIKYLDDEDMKVKEAAGGILANLALSRVNHDIMVEADVIPKLAKFLTSNSEASKVIRKEARNALLELVKDEYYRILVIEEGLVPVPLIGAAAYKSFTPGFHSWPTLPDGTEIERNSRQPSRFGASELLLGLNIDDKNANMEEAKINAIVGRTQQRFLARIGAIEMEETTIPHSECSNDQRLTLLHWMDGVARLVLILELEDKSAILRASESIASACINEHMRIAFKEAGAVNHLVWLLSCDDNAVQLAVIQALEKLSASNVVCRVIEAEGGLGPLVSILKCPEIAGTIVEKSLNILSRILDPSKEMQLKFYDGSVNGSQKAFGGAKSDGVSTGLSSAEEAVSKTNTRNYILDSVFITHLVEILKSSSPRLQEKAASVLEFVALTDPTLAPILSVDVENGLNSAFQQKNLKISADMESDAEDQFSEAYAIEFEEAGLAISAASRLLTRLLDCEQFRHKINFSHFIDMLREILRSSIPLHNKEWVAACLVKLGSLSGNNLSFYPINMEVTLYETIPRLVEQIKTSFSPEAQETAVVELNRIISEGVVDSTGAIISGEAIYPLVKLIEEGSERAVEASLAILYNLSMDSENHSALVAAGAAPALRRIVQSQRPQWERALHLLRSLQM* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00049 837 Gene3D - 76 307 IPR011989 -
Rops1g00049 837 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 36 836 - -
Rops1g00049 837 SUPERFAMILY ARM repeat 396 834 IPR016024 -
Rops1g00049 837 Gene3D - 385 613 IPR011989 -
Rops1g00049 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 768 810 IPR000225 GO:0005515
Rops1g00049 837 SUPERFAMILY ARM repeat 86 301 IPR016024 -
Rops1g00049 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 199 IPR000225 GO:0005515
Rops1g00049 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 125 167 IPR000225 GO:0005515
Rops1g00049 837 SMART arm_5 239 282 IPR000225 GO:0005515
Rops1g00049 837 SMART arm_5 757 797 IPR000225 GO:0005515
Rops1g00049 837 SMART arm_5 556 596 IPR000225 GO:0005515
Rops1g00049 837 SMART arm_5 431 471 IPR000225 GO:0005515
Rops1g00049 837 SMART arm_5 198 238 IPR000225 GO:0005515
Rops1g00049 837 SMART arm_5 155 197 IPR000225 GO:0005515
Rops1g00049 837 SMART arm_5 113 154 IPR000225 GO:0005515
Rops1g00049 837 Gene3D - 645 836 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00049 114 252 U-box Gene Family AT2G23140 32.624 2.82e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00049 - - gmx:100793128 1316.6