Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00038 ATGGACAGTATTCTGGGTCTTCTCAAACTTCGTATTAAGAGAGGGATTAACCTTGCAGTTCGCGATGCTCGTACCAGCGACCCTTATGTCGTTGTCAACATGGGTGAACAGAAGCTGAAGACTCGTGTAGTGAAAAACAACTGCAACCCTGAGTGGAATGAAGAATTGACCCTTTCTATAAAGGATGTTAAAATTCCAATACATCTGACAGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGATGCAGAGATAGACTTGAAACCATATGTTCAGAGTGTGCAGATGGGGTTGACCAAGCTCCCAAATGGATGTGCAGTCAAGAGGATTCAACCATGTAGGACTAACTGCCTTGCTGAAGAGAGCAGCTGCATGTTTCAAGATGGAAATATCATCCAAGAAATGATTTTAAGATTGAGAAATGTTGAAAGTGGTGAACTAGTTGTGGAAATTGAGTGGGTTGATGTTCCAGGTTGCAAGGGCTTAAAAGAGGTGGAAATTTAA 513 0.4152 MDSILGLLKLRIKRGINLAVRDARTSDPYVVVNMGEQKLKTRVVKNNCNPEWNEELTLSIKDVKIPIHLTVYDKDTFSVDDKMGDAEIDLKPYVQSVQMGLTKLPNGCAVKRIQPCRTNCLAEESSCMFQDGNIIQEMILRLRNVESGELVVEIEWVDVPGCKGLKEVEI* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00038 170 SMART C2_3c 7 102 IPR000008 -
Rops1g00038 170 Pfam C2 domain 7 96 IPR000008 -
Rops1g00038 170 CDD C2_ArfGAP 5 148 - -
Rops1g00038 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 100 IPR035892 -
Rops1g00038 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Rops1g00038 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Rops1g00038 170 Gene3D C2 domain 4 163 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00038 Rops-Chr1 1272684 1276223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00038 38 165 C2H2 Transcription Factor Family AT1G70790 69.231 3.51e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00038 - - gmx:100788395 300.827