Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00030 ATGAGTCATGTACTTGTTGTTGTTGTTGCAATACTTGTCCTTGTTTTCTACCTGGTGAAAAATTTTCACTCAATGTTTTGGGTCCCATGGAAAATCCAGTGCCACTTCATGAATCAAGGCATAACTGGCCCTGGCTACCGTTTGATCTATGGTAACTCATTAGAGATCAAACGGTTATTTGAAGAAGCTAAATCAGAGGAGGCAAAGGGGTTTGATCATGACATATTGAAACGTGTGGTTCCATTCTACCAAATGTGGTCTTGCATGTATGGGAAAACTTTCCTTCACTGGTTCGGGTCAACACCCCGGTTGATAATAACCGACCCGGATATGATCAAGGAGGTGTTGATGAGTAAGAGTGGAGATTATGGGAAAGTTCCCCATAACCCACTGGCCAAGTTGCTTTTTGGACAGGGACTTGTTGGGTTGCAGGGTGATCAATGGGCTTTTCATAGAAGGATAATAAACATGGCCTTCAACATGGAGCTTGTTAAGGGATGGGTGCCAGATATTGGAGCAAGTGTGACAAAGATGCTGGAGAAATGGGAAGATGAAAGAGGAGGAAGAGATGAAGTTGAGATAGATGTGTTCAGAGAGCTTCATGATCTTTCTGCTGATGTTATATCAAGGACTGCTTTTGGCAGCAGCTATGAAGAGGGAAAACATATTTTCAAGTTACAGGAGCAGCAAATGCATCTCTTCTCACAGGCATCTAGAAGTGTCTATATCCCTGGATTTAGGTATTTGCCAACTAAGAAGAACAGGGATAGGTGGAGACTAGATAAAGAAACACGTGAATCAATTCTCAAGCTGATCGAGACCAAAAGAAATGCAAGGGAAAATGCAAGAAATGTACTAACTTCATTGATGAGTTCCTACAAGAATGAAGTTGGAGGAGAAGACAAGTTAGGGGTGGAAGAAATTATAGATGAATGTAAAACCATCTACTTTGCTGGAAAGGAGACAACAGCTAATTTGTTGACTTGGGCGCTTCTTCTTTTAGCAAAACATCAGGAGTGGCAAAGTAAGGCGCGTGAAGAAGTTCTTCATGTCATTGGACACAATCAACTTCCAGTTCCTGACAATTTGAATGATCTTAAGATTGTTAGCATGATAATTAATGAAACACTTAGGCTCTATCCTCCAGCTGTGATGCAAATGAGGCAAACCTCCAAAGATGTGATGCTAGGGAGCATTAAAGTCCCTGCTAAGACTCAACTCCTCTTGGCATTGATTGCTGTCCATCATGACCGAAAAATCTGGGGAGAAGATTGTCATGAGTTTAATCCAATGAGATTTAATGAGCCTCGAAAGCATTTAGCCGCATTCTTTCCTTTTGGATTAGGCCCGCGAATCTGTGTTGGGCAAAATTTGGCATTGGTTGAGGCAAAGATTGCTCTTGCTTTGATCATTCAACGTTATAGTTTTGTGTTATCTCCAAGCTACAAGCATGCTCCTACACTATTTATAACTTTGCAACCTCAATATGGTGCACAAATAGTCTTCAGAAGGATTTCATATTGA 1524 0.4114 MSHVLVVVVAILVLVFYLVKNFHSMFWVPWKIQCHFMNQGITGPGYRLIYGNSLEIKRLFEEAKSEEAKGFDHDILKRVVPFYQMWSCMYGKTFLHWFGSTPRLIITDPDMIKEVLMSKSGDYGKVPHNPLAKLLFGQGLVGLQGDQWAFHRRIINMAFNMELVKGWVPDIGASVTKMLEKWEDERGGRDEVEIDVFRELHDLSADVISRTAFGSSYEEGKHIFKLQEQQMHLFSQASRSVYIPGFRYLPTKKNRDRWRLDKETRESILKLIETKRNARENARNVLTSLMSSYKNEVGGEDKLGVEEIIDECKTIYFAGKETTANLLTWALLLLAKHQEWQSKAREEVLHVIGHNQLPVPDNLNDLKIVSMIINETLRLYPPAVMQMRQTSKDVMLGSIKVPAKTQLLLALIAVHHDRKIWGEDCHEFNPMRFNEPRKHLAAFFPFGLGPRICVGQNLALVEAKIALALIIQRYSFVLSPSYKHAPTLFITLQPQYGAQIVFRRISY* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00030 507 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 498 - -
Rops1g00030 507 Gene3D Cytochrome P450 37 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 SUPERFAMILY Cytochrome P450 76 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Rops1g00030 507 Pfam Cytochrome P450 82 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00030 507 FunFam Cytochrome P450 734A1 26 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00030 Rops-Chr1 1074743 1078348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00030 23 506 Cytochrome P450 AT1G75130 56.379 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00030 - - gmx:100775195 823.542