Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00010 ATGACTTTCTGGGGAGTGGAAGTAAAACCAGGAAGGCCTTTTACTCACAAATACGATGACTCCAAAGGACGCCTCCGTGTTTCATCGGCCACATTGGGGTTTGGCACTGCTAAAGCACAAACCACACTGCAATGTTTTGTGGGAGACAGGAGTCCTGTGTATCTGTGCACTCTCTGTCCTCTACAAACTGAGACTTTGACATTAAACTTGGAGTTTGAGGAACCTGATCCTGTTATTTTCTCCGTTATCGGCCCTCGTAGCATTCATCTCTGCGGTTACTATGTTGCTGCTTCCCCTAATACCAATGATTCGGAACCATATGGAGAAGATATTGCAGATACAGAGACAGAGGGATCTCGTGACAGTGATGAAGATGAAGATGAGGATAGTTTTATTGATGATGACAGTGATCCAAAGGTTTTCCCACCATCTCCTGTTTCCAATGAAGTGATGACTGCAGAGGAAGCTTCTCATGATCGCACACCAAAAGGTAAGAAAGGCAGTCTTAGACGGCTGAGGAAGAAGTACCAGGTGGTAGACTCAGATGATGATGGCTGTTCTGAAGAAAAGACTATTGTCAGTGACAGTTTGGATGCCCAATCCAAGGAAATTGATAATGAAGATGGGTTACCAATTTCATCTCTTTACCAAATTAAAGCCTCTAGAAGGGTCTTGGAGCAGGAAATGGATGATGATGTTGACACAGGAGCAGATGATGCTGGCAACAAGAGTGGTGATGATGGTGGAAAAAGTGTTATTGATACAAATTTAAAAACTGACAATGTCCTTGTAGACAGTCAACTGCAAAGGGAAGTTGAACCGTCTGACCACATGGTAAATCCTTGCAATGTTCTGGACGTTGGGGATATCAAAAAATTAAAAAAGAAAAAGAAGGGAAAAGAGAAAGAAGCAAAGAGTTCTTGTAATGGCCATTCCATCAAACTAGATAATGCTGTGCAAGATGAGCCAAAATTGGACAAGATGACCCAGGATTTGCTGGCAGGAAATGAACAACACCAACAGCATGCTGATGATAAGGATGTTAAGATTTCAGACAATGTTGCATTGCTTTCTGCTGAAATGGATCCTGAGAAGAGAACAAAAAAGAGGAAGAGAGAACATAAAGCTTCTCATCTTGAGGCTGACAATGGATACAATGAAGATATCATCCAAGATTGCCAAGCCGACAGAGATACAGCAGAGTCTGATAATCGGATTCATAAATTTTCTGAAGAGCAACAGCATAAGCTAACGAATGAAAAGATGGTGGACGAGGGTGCTCATGACTCTCCAAATGGAAATCAATCCGACAATAGAAAAATTAAGAGAAAGAAGAAAAAGATGAAAAGTCAGGGCAATGTGGAAGTTGTTAATTCTGATATGCCTGCATATGGTGAGCAAAGTGGTGATATGATGAAAGAGGATGGAGATGAGATGGCTGATGCAAAGGCTTCCCAAGTTAGAACATTGACAAACGGATTAGTTATTCAGGATCTAGAGATGGGGAGAGAAGATGGCAAAATTGCTACTGTAGGGAAAAAGATCAGCATCCATTACACTGGCAAGTTGATGGAAAATCAAATGGCATTCGAGTCAACTGCTGGCCAAGCTCCTTTCAAATTTCGCCTTGGTAAAGGAAGAGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCGAGTTGGAGGAAAGAGAAGACTTGTAATCCCACCATCAATGACGTCTAAGAGTGATGATCAGAGTGCCAAAATACCATCAAATTCATGGTTGGTTTATGACTTCGCACTAGTTAAAGTTCACTGA 1803 0.4187 MTFWGVEVKPGRPFTHKYDDSKGRLRVSSATLGFGTAKAQTTLQCFVGDRSPVYLCTLCPLQTETLTLNLEFEEPDPVIFSVIGPRSIHLCGYYVAASPNTNDSEPYGEDIADTETEGSRDSDEDEDEDSFIDDDSDPKVFPPSPVSNEVMTAEEASHDRTPKGKKGSLRRLRKKYQVVDSDDDGCSEEKTIVSDSLDAQSKEIDNEDGLPISSLYQIKASRRVLEQEMDDDVDTGADDAGNKSGDDGGKSVIDTNLKTDNVLVDSQLQREVEPSDHMVNPCNVLDVGDIKKLKKKKKGKEKEAKSSCNGHSIKLDNAVQDEPKLDKMTQDLLAGNEQHQQHADDKDVKISDNVALLSAEMDPEKRTKKRKREHKASHLEADNGYNEDIIQDCQADRDTAESDNRIHKFSEEQQHKLTNEKMVDEGAHDSPNGNQSDNRKIKRKKKKMKSQGNVEVVNSDMPAYGEQSGDMMKEDGDEMADAKASQVRTLTNGLVIQDLEMGREDGKIATVGKKISIHYTGKLMENQMAFESTAGQAPFKFRLGKGRVIEGWDVGLEGMRVGGKRRLVIPPSMTSKSDDQSAKIPSNSWLVYDFALVKVH* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00010 600 MobiDBLite consensus disorder prediction 99 205 - -
Rops1g00010 600 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 512 600 IPR001179 GO:0003755
Rops1g00010 600 SUPERFAMILY FKBP-like 469 599 - -
Rops1g00010 600 MobiDBLite consensus disorder prediction 226 245 - -
Rops1g00010 600 MobiDBLite consensus disorder prediction 173 191 - -
Rops1g00010 600 Gene3D Nucleoplasmin core domain 1 99 - -
Rops1g00010 600 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 508 596 IPR001179 GO:0003755
Rops1g00010 600 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Rops1g00010 600 Gene3D - 463 600 IPR046357 GO:0003755
Rops1g00010 600 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 42 599 - -
Rops1g00010 600 MobiDBLite consensus disorder prediction 108 134 - -
Rops1g00010 600 MobiDBLite consensus disorder prediction 356 388 - -
Rops1g00010 600 MobiDBLite consensus disorder prediction 293 323 - -
Rops1g00010 600 MobiDBLite consensus disorder prediction 424 481 - -
Rops1g00010 600 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00010 Rops-Chr1 395579 399453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00010 512 598 Calmodulin-binding Proteins AT3G25230 37.500 1.51e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00010 K14826 - gmx:100798135 691.804