Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03994 ATGGAATTTGAAACTATGTATCCATCTTGTTTTATGTCAAATTCAAATTGGTTTGTTCAAGAGAGGCACAATATAGAATGGACTAGAGAAGAGAACAAGCAATTTGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGATCGATGGCTGAAGGTGGCAGCCATGCTCCCTGGGAAAACTGTCTTTGATGTGATCAAGCACTATAGGGAATTGGAAGATGATGTTAGTGAAATAGAAGCTGGGAGGGTTCCAGTTCCTGGATATCTTTCCTCTTCTTTCTCGTTGGAGTATGATGGTTGCAGAAAGAGGCCTATAACTGTAAGGAGTTCTGATCATGAGAGGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTAAAGTATGGTAAAGGGGATTGGAGAAATATCTCTCGCAATTTTGTTGTCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTACATAAGGCAAAAGCTTTCTGGAGGGAAAGATAATAAAAGGAGACCTAGTATCCATGATATCACCACTGTTAATCTTATAGAAACTACCACATCTGATCAACACAAGCCTCTTTTATTCAATGAGCCTCATCACATGCCTTCACTGCAGCAGAAGCTGACTAGCATGCCAAAAGCACAACCAGAATGGATTAATCACCACAACAATGGGCCACACATGGTTTTCAATCCAAAAAATGATGATATGTTCATGTCACCTTCGTCTGGGATCTCTTCCAAGACCCCGAAGTTTCAAGGGCAGGATCTATACGACTGTGCTTTTCATCAGGCTTATGCCAATCAAAAAACTCAGGGTTTCAGGATGGCTTCTAATGACTTCAATAAGGATGCTATTTTTGGTATTCGTGCACTGTAA 906 0.415 MEFETMYPSCFMSNSNWFVQERHNIEWTREENKQFESALAIYDKDTPDRWLKVAAMLPGKTVFDVIKHYRELEDDVSEIEAGRVPVPGYLSSSFSLEYDGCRKRPITVRSSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITTVNLIETTTSDQHKPLLFNEPHHMPSLQQKLTSMPKAQPEWINHHNNGPHMVFNPKNDDMFMSPSSGISSKTPKFQGQDLYDCAFHQAYANQKTQGFRMASNDFNKDAIFGIRAL* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03994 301 Gene3D - 119 170 - -
Rops11g03994 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 168 IPR006447 GO:0003677
Rops11g03994 301 SMART sant 117 167 IPR001005 -
Rops11g03994 301 SMART sant 23 75 IPR001005 -
Rops11g03994 301 CDD SANT 26 72 IPR001005 -
Rops11g03994 301 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 250 IPR043363 -
Rops11g03994 301 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Rops11g03994 301 CDD SANT 120 164 IPR001005 -
Rops11g03994 301 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Rops11g03994 301 Pfam Myb-like DNA-binding domain 120 164 IPR001005 -
Rops11g03994 301 FunFam transcription factor MYB1R1 119 170 - -
Rops11g03994 301 FunFam Transcription factor SRM1 19 86 - -
Rops11g03994 301 ProSiteProfiles Myb-like domain profile. 113 165 IPR001005 -
Rops11g03994 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 169 IPR017930 -
Rops11g03994 301 Gene3D - 19 86 - -
Rops11g03994 301 ProSiteProfiles SANT domain profile. 121 169 IPR017884 -
Rops11g03994 301 SUPERFAMILY Homeodomain-like 115 169 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03994 Rops-Chr11 74442205 74444201 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g03994 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03994 - - gmx:100783469 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03994 11 74442205 74444201 Rops9g00872 9 14229417 14231323 ECH
Rops11g03994 11 74442205 74444201 Rops11g03994 11 74442205 74444201 ECH
Rops8g01879 8 42677013 42679108 Rops11g03994 11 74442205 74444201 ECH
Rops11g03994 11 74442205 74444201 Rops8g01879 8 42677013 42679108 ECH
Rops11g03994 11 74442205 74444201 Rops9g00872 9 14229417 14231323 PCT