Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03989 ATGGACGAGGGCGTGTCAGGCTTTTGTATTAGAGCTGGAAGTGTTGGTGGTAATGGTGGCAGTACTGGCACAAAGTGTGGGCGTTGGAATCCCACTACTGAACAGGTTAAGCTTCTCACTGAACTGTTCAGTTCTGGACTCCGTACACCAAGCACTGATCAGATTCAAAGGATCTCAAATCAGCTTAGTTTATATGGTAAGATTGAGAGCAAGAATGTGTTCTACTGGTTTCAGAACCATAAGGCTAGGGAAAGACAGAAGCGTCGTAAGGTCTCTTTTGATGCTAAGGATGTGATTCTTAGAGAAAACTCCAAGTCCATGAATTCTTCTTCTACACAAAATTTTGCACAGCTCTATCAGGTTTCTGAGCCCCAGAGGGTGATTGAGACTCTTCAACTCTTTCCCTTGAACTCCTACGGGTTTCTAAATCCGGTGATTACGCTGGCACGTGGTTGTTCTTTCGTCGCCTCGATTGTCACCGGAGATAGTTTATCGGTGAAGCAGTTCTCGCCGCCGGTCGCCGGTAATCGCATTGTGAAATCCCAAGTATGGGAACTCACACCTGTTGATCTTCAATCCGGCACTCAGAAGCAACCGACGATGGCCACAATTACATCAATGACAAGTATACGGTCACCAGATTCCTTGTTCTATGATGCACCTCAATTTGTGACACACATTGATGACCTTGCAATTGCTGCTTTGACTAAGTATTACCCCAAGGTTTTTCCAGTTAGCAACACTCCTAGAAATTTGCCTGTTAGCACCCTAAGAACATTGGTGTATTATAAAATATCACATGTGGATGGTCAAATAACTAACCCAGAGCAAAGAATTGCCAGTGATATGCGAAAGTTCTGTTTGGAGTTGAGTGAAATTGTACAGGATGATCTAACAGCGGTGACTGATGGAATTCTATATACTTGGCAGCTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGGCCTATGTAATTGGAGCTGGGGCCCCGATCAGAAATTTCTCTCCTGCATTTGGGAAACTTATGTCCAGAGAGCAGCAACTGGAAGGAGAGTATCAACATCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTACGGTGGAGAGAGGAGAGAAAAAGATCATATTCAACAGAAGTTTAAGACATTGGTTAGGCGCATGAATAAAGTGTTGCATGACCATTGGTGGTTTGGCATGATTCAGAATTTTTTATTGAAGTACCTTGGTGCAAAGGTTGTTGTTATTTTTGATTATCGAACCTTTCTTTTTGAGCCATATAAGGTTGTGACCCCCACCAGTAATATCTTGGTGGATGATTTGACCCTCAAGGTTGAGCCATGA 1353 0.4316 MDEGVSGFCIRAGSVGGNGGSTGTKCGRWNPTTEQVKLLTELFSSGLRTPSTDQIQRISNQLSLYGKIESKNVFYWFQNHKARERQKRRKVSFDAKDVILRENSKSMNSSSTQNFAQLYQVSEPQRVIETLQLFPLNSYGFLNPVITLARGCSFVASIVTGDSLSVKQFSPPVAGNRIVKSQVWELTPVDLQSGTQKQPTMATITSMTSIRSPDSLFYDAPQFVTHIDDLAIAALTKYYPKVFPVSNTPRNLPVSTLRTLVYYKISHVDGQITNPEQRIASDMRKFCLELSEIVQDDLTAVTDGILYTWQLCSYASPKYVFWAYVIGAGAPIRNFSPAFGKLMSREQQLEGEYQHLHSRLRTHSESIAFYGGERREKDHIQQKFKTLVRRMNKVLHDHWWFGMIQNFLLKYLGAKVVVIFDYRTFLFEPYKVVTPTSNILVDDLTLKVEP* 451
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03989 450 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 110 IPR044555 GO:0003700|GO:0099402
Rops11g03989 450 FunFam WUSCHEL-related homeobox 11 25 93 - -
Rops11g03989 450 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Rops11g03989 450 Gene3D - 25 93 - -
Rops11g03989 450 SMART HOX_1 24 91 IPR001356 GO:0003677
Rops11g03989 450 Pfam ABC transporter transmembrane region 2 258 417 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03989 450 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Rops11g03989 450 CDD homeodomain 28 88 IPR001356 GO:0003677
Rops11g03989 450 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops11g03989 Rops-Chr11 74242251 74247759 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03989 260 430 Acyl Lipid Metabolism Gene Families AT4G39850 74.566 1.30e-84 281
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops11g03989 ABC_membrane_2 9.8e-51 CL0241
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03989 K25819 - gmx:100796571 289.656