Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops11g03987 | ATGGCGGCGAGCGATCGCACAGTGTTACAGTTCTCTTATTCTTCTTCGCAGAGCTTGTCAGCGAAGGTCCATCCTCTGGTTATCTTCAACATATGTGATTGCTACGTTCGACGCCCTGACCAAGCTCAGCGAGTTATCGGAACCCTACTCGGCTCCGTCCTTTCCGACGGAACCGTTGATATTCGTAATTCCTATGCCGTTCCTCACAATGAGGCTCTCGACCAGGTTGCTTTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAAATGGTGGTAGTGCGTTAATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATACATTTGACTGTTGATACAGGATTCACAAATGGAGGGGGTACCATAAAAGCATATGTGTCAAACAATTTATCTCTTGGAGACCGACAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTTGAAGCTGAACGAATTGGATTTGATACCCTGAAGGCAATCACTGTTGACAAAATTCCCTCTGATTTAGAAGGCATGGAAGCATCAATGCAACATCTACTAGCCTTGTTTGATGACATTTACAAATATGTTGATGATGTCGTGGAAGGGCGTGTTGCACCTGACAACAAAATTGGGAGATATATATCAGATGCTGTAGGTTCCCTTCCCAAATTGCCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGCTTACAGGATCACTTGCTCTTGCTATATTTATCTAGCATCACAAGAACACAGCTTAGCTTGGCCGAAAAATTGAACACAGCCGCTCAGATTCTGTAA | 861 | 0.4274 | MAASDRTVLQFSYSSSQSLSAKVHPLVIFNICDCYVRRPDQAQRVIGTLLGSVLSDGTVDIRNSYAVPHNEALDQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVNGGSALIHEFYSREVPNPIHLTVDTGFTNGGGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERIGFDTLKAITVDKIPSDLEGMEASMQHLLALFDDIYKYVDDVVEGRVAPDNKIGRYISDAVGSLPKLPPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops11g03987 | 286 | CDD | MPN_eIF3f | 22 | 279 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Rops11g03987 | 286 | Gene3D | Cytidine Deaminase, domain 2 | 8 | 186 | - | - | |
Rops11g03987 | 286 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 19 | 282 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Rops11g03987 | 286 | ProSiteProfiles | MPN domain profile. | 21 | 152 | IPR037518 | - | |
Rops11g03987 | 286 | FunFam | Eukaryotic translation initiation factor 3 subunit F | 9 | 187 | - | - | |
Rops11g03987 | 286 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 19 | 123 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Rops11g03987 | 286 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 14 | 283 | - | - | |
Rops11g03987 | 286 | SMART | pad1_6 | 20 | 151 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Rops11g03987 | 286 | Pfam | Maintenance of mitochondrial structure and function | 173 | 279 | IPR024969 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops11g03987 | Rops-Chr11 | 74192491 | 74196698 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops11g03987 | 2 | 286 | Eukaryotic Initiation Factors Gene Family | AT2G39990 | 75.945 | 3.19e-158 | 441 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops11g03987 | K03249 | - | gmx:100811797 | 489.189 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops11g03987 | 11 | 74192491 | 74196698 | Rops11g03987 | 11 | 74192491 | 74196698 | ECH |