Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03987 ATGGCGGCGAGCGATCGCACAGTGTTACAGTTCTCTTATTCTTCTTCGCAGAGCTTGTCAGCGAAGGTCCATCCTCTGGTTATCTTCAACATATGTGATTGCTACGTTCGACGCCCTGACCAAGCTCAGCGAGTTATCGGAACCCTACTCGGCTCCGTCCTTTCCGACGGAACCGTTGATATTCGTAATTCCTATGCCGTTCCTCACAATGAGGCTCTCGACCAGGTTGCTTTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAAATGGTGGTAGTGCGTTAATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATACATTTGACTGTTGATACAGGATTCACAAATGGAGGGGGTACCATAAAAGCATATGTGTCAAACAATTTATCTCTTGGAGACCGACAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTTGAAGCTGAACGAATTGGATTTGATACCCTGAAGGCAATCACTGTTGACAAAATTCCCTCTGATTTAGAAGGCATGGAAGCATCAATGCAACATCTACTAGCCTTGTTTGATGACATTTACAAATATGTTGATGATGTCGTGGAAGGGCGTGTTGCACCTGACAACAAAATTGGGAGATATATATCAGATGCTGTAGGTTCCCTTCCCAAATTGCCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGCTTACAGGATCACTTGCTCTTGCTATATTTATCTAGCATCACAAGAACACAGCTTAGCTTGGCCGAAAAATTGAACACAGCCGCTCAGATTCTGTAA 861 0.4274 MAASDRTVLQFSYSSSQSLSAKVHPLVIFNICDCYVRRPDQAQRVIGTLLGSVLSDGTVDIRNSYAVPHNEALDQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVNGGSALIHEFYSREVPNPIHLTVDTGFTNGGGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERIGFDTLKAITVDKIPSDLEGMEASMQHLLALFDDIYKYVDDVVEGRVAPDNKIGRYISDAVGSLPKLPPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* 287
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03987 286 CDD MPN_eIF3f 22 279 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops11g03987 286 Gene3D Cytidine Deaminase, domain 2 8 186 - -
Rops11g03987 286 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 19 282 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops11g03987 286 ProSiteProfiles MPN domain profile. 21 152 IPR037518 -
Rops11g03987 286 FunFam Eukaryotic translation initiation factor 3 subunit F 9 187 - -
Rops11g03987 286 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 19 123 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops11g03987 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 283 - -
Rops11g03987 286 SMART pad1_6 20 151 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops11g03987 286 Pfam Maintenance of mitochondrial structure and function 173 279 IPR024969 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops11g03987 Rops-Chr11 74192491 74196698 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03987 2 286 Eukaryotic Initiation Factors Gene Family AT2G39990 75.945 3.19e-158 441
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03987 K03249 - gmx:100811797 489.189
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03987 11 74192491 74196698 Rops11g03987 11 74192491 74196698 ECH