Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03985 ATGGAGGGGAAGGAGCAAGATGTTTCATTGGGAGCCAACAAATTCCCAGAGAGGCAACCCATTGGAATTGCAGCTCAGAGCCAAGACGATGGGAAGGATTACAAGGAAGCACCCCCAGCGCCACTTTTCGACCCCAATGAGCTCACATCATGGTCCTTCTACAGAGCCGGGATAGCAGAGTTCGTGGCCACTCTTCTGTTCCTTTACATCACCATCTTGACGGTCATGGGAGTGGTCAAGGCCGACAGCAAGTGCAAAACTGTTGGTATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTCGCCCTTGTTTACTGCACCGCTGGCATCTCTGGGGGTCACATAAACCCGGCTGTGACATTCGGTTTGTTTTTGGCGAGGAAATTGTCGTTGACAAGGGCGCTGTTCTACATGGTGATGCAGTGCCTTGGTGCTATCGTTGGCGCTGGTATCGTCAAGGGTTTCGAGGGAAAATCCACGTATGGCAAATACAACGGTGGTGCCAACTTTGTTAACCCTGGTTACACCAAAGGTGATGGACTTGGTGCTGAGATCGTTGGCACCTTCATTCTTGTCTACACCGTTTTCTCAGCCACCGATGCTAAGCGTAACGCCAGAGACTCTCACGTGCCTATTTTGGCACCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACTATCCCAATCACTGGAACCGGGATCAACCCCGCTCGAAGTCTCGGTGCTGCCATTGTCTTCAACAAAGACCTTGGTTGGGATGAACACTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCTCTTGCGGCTCTTTATCACCAAGTTGTAATCAGGGCCATTCCTTTCAAATCCCATTGA 870 0.5057 MEGKEQDVSLGANKFPERQPIGIAAQSQDDGKDYKEAPPAPLFDPNELTSWSFYRAGIAEFVATLLFLYITILTVMGVVKADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAIVGAGIVKGFEGKSTYGKYNGGANFVNPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKDLGWDEHWIFWVGPFIGAALAALYHQVVIRAIPFKSH* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03985 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Rops11g03985 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 Gene3D Glycerol uptake facilitator protein. 40 287 IPR023271 -
Rops11g03985 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
Rops11g03985 289 MobiDBLite consensus disorder prediction 1 36 - -
Rops11g03985 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g03985 289 FunFam Probable aquaporin PIP1-2 40 289 - -
Rops11g03985 289 SUPERFAMILY Aquaporin-like 46 282 IPR023271 -
Rops11g03985 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03985 Rops-Chr11 74143788 74145311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03985 1 288 Major Intrinsic Protein MIP AT4G23400 82.986 3.87e-168 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03985 K09872 - gmx:100791447 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03985 11 74143788 74145311 Rops11g03985 11 74143788 74145311 ECH
Rops11g03985 11 74143788 74145311 Rops9g00860 9 14061282 14062791 PCT