Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03960 ATGGCCTCAAGAGCCACTGGAACACTGATTTTGGCGTGTCTGATATGGCTTTTCTTCCTCGGCGCCGTTATTACATTCTTTCAGTTCATGATGGTAGAGAACGGAAACGACATCGTTTCCTCTCAGAACAAGCTCATCACTACTCAAAATCACAATACAGATAATCCATTGGGAGAAAATTTGGAGGGTGTGACTCACAAAGTGTATTTTGATGTAGAGATCGATGGAAAATTAGCGGGTCGCATAGTCATGGGCCTTTTTGGGACTACAGTACCGAAAACTGTAGAAAACTTTCGAGCGCTTTGTACGGGAGAGAAAGGGGTGGGAAGAAGTGGGAAGCCTCTTCTTTATAAAGGGAGCACATTCCATAGGATAATACCAAGCTTTATGGTACAGGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGTTGAAGCATACTGGACCAGGATACTTATCCATGGCAAATTCTGGGCCAGACACCAATGGCTCCCAGTTTTTCATAACAACAGTAAAAACCAGCTGGTTGGATGGACGCCATGTTGTATTTGGCAAAGTACTTTCTGGTATGGACGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCCAAAATAAATGAACAAAATTTGCAGACTCAAAGTTCGTCTTCATGTAATTTAAGGCTGTATTTTTGCTATTTTGCTTGTCTACACTAG 750 0.4253 MASRATGTLILACLIWLFFLGAVITFFQFMMVENGNDIVSSQNKLITTQNHNTDNPLGENLEGVTHKVYFDVEIDGKLAGRIVMGLFGTTVPKTVENFRALCTGEKGVGRSGKPLLYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGPDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKINEQNLQTQSSSSCNLRLYFCYFACLH* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03960 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 192 IPR002130 GO:0000413|GO:0003755
Rops11g03960 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 IPR002130 GO:0000413|GO:0003755
Rops11g03960 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Rops11g03960 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 208 IPR002130 GO:0000413|GO:0003755
Rops11g03960 249 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Rops11g03960 249 SUPERFAMILY Cyclophilin-like 64 224 IPR029000 -
Rops11g03960 249 Gene3D - 58 232 IPR029000 -
Rops11g03960 249 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 67 222 - -
Rops11g03960 249 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 69 238 IPR002130 GO:0000413|GO:0003755
Rops11g03960 249 FunFam Peptidyl-prolyl cis-trans isomerase 62 231 - -
Rops11g03960 249 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 117 134 IPR020892 GO:0003755|GO:0006457
Rops11g03960 249 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 70 221 IPR002130 GO:0000413|GO:0003755
Rops11g03960 249 CDD cyclophilin_ABH_like 66 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03960 Rops-Chr11 73765194 73768019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03960 80 212 U-box Gene Family AT5G67530 47.015 6.77e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03960 K01802 - gmx:100798499 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03960 11 73765194 73768019 Rops11g03960 11 73765194 73768019 ECH