Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03955 ATGTCCTCATCGACCCACCGTCCTCCACCGCCATTCTCCGACTCAGACTCCGACGGCGGCTCCTCCACCGTTGAGGCCCTACGCCACTCCGACCTCTCCGATTCCATATTCAAATCTTACTTCACTTTCTCCGGCCACTCCACCGCCACTGCCACCGACCTTTCCAAGATCCGATCGTTCCTCACTTCTTCCTCCTCCGGCGCTCTATCATGCATGATATGCCTCGAACGCATCAAACCCTCCGACCCCACTTGGTCCTGCAACTCCCTTTGCTTCGCCGTGTTCCACCTCATCTGTATCCAAAGCTGGGCACGTCAAGCCTCCGATCTCTCCGCCGCACGGGCCGCCACGCGCCTCCCCATTTCACCTGAAAAGCTCCCCGACGCCGCCGTGTGGAACTGCCCGAAATGCAGGGTGGATTACCCCAAAACCCACATCCCAAAAACATACCTTTGCTTCTGTGGGAAATTGGAGAACCCTCCCAGTGATGATCCATGGGTTTTGCCTCATTCATGTGGTGAAGTTTGTGAGAGGCCATTGAAGAACAATTGTGGGCACCATTGTTTGTTGCTTTGCCATCCAGGGCCATGCCCCTCTTGCCCTCAACTTGTTAAAGTTCGATGCTTTTGTGGGTCCCATGAAGATGTCAGAAGATGTGGGTTCAAAGATTTCTCTTGTGAAAGTACTTGTTCCAAGGTTTTGGATTGTGGGGTTCATAGGTGTGTTGAGATTTGCCATCGTGGTGCTTGTCCACCATGCAGGACACGTGGCGTGTATAGCTGCCAATGTGGGAAGAGGAAAGAGGAAAGGGAGTGTTGTGATCGTGAATTTCAATGTGGTGTACCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTGAAAAGGGGTGTCATTCTGGTGAGTGTGGTGAGTGTCCCCTTCAAGGGAAGAGAACTTGCCCTTGTGGGAAAAGGGTCTATGAAGGAATGCCTTGTGATGCTCCTGTGCGAGTGTGTGGCGCCACTTGTGATAAAATGTTACCTTGCGGGTATCATAGGTGCCCTGAGAGATGCCACCGTGGACAATGCATCGTGACTTGTAGGACTGTTGTGAAGAAGTCATGTCGTTGTGGAAGTCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCGTGTGAAAGGAAGTGTCAAAGGATGCGTGACTGTGGTAGGCATGCTTGTAAACGTCGCTGCTGTGATGGGGATTGCCCTCCCTGCTCAGAGATATGTGGCAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGTCATAGAGGTGCCTGTGCTCCTTGTCCAATAATGGTGACAATTTCGTGTGCATGTGGGGAGACACATATTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAAATGTCGTAAACTGTGTCCTATTACGCCTTTATGCCGGCATGAATTAAACCGCAAGCCACACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTACCATGTGCAGAAGAGTACCAATGTGGCCATACATGCAATTTAAGGTGTCATGGCCCTAAGCCGCCTCCTAACCCTGAGTTTACTCTCAAACCAAAGAAAAAGAAGATTATACATCAAAGTGAAAGTGTACCTGGCACTCCATGCCCTCCCTGCCCAGAACTTGTATGGAGATCATGTGTCGGGCAACACATTGGAACAGAGAGAATGATGGTCTGCTCTGATAAATCACAGTTCTCCTGCGAAAATTTATGTGGTAATCCTCTACCATGTTGTAATCATTATTGTACTAACACCTGCCATGCCTTGGAGAACCGGTCTTCCATGAACCAGTTAGTGAGAGGCGAGCCTTGTGAAGATTGTTCTCTTCCTTGCCAAAAGGAAAGAGAGCCTAAATGTCCACATCACTGCCCTCGGCCATGCCATCCCGGAGACTGTCCCCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGCACAATGGTCCATGTTTTTGAGTGCATATATTACAACAGCTTGTCTGCAAAGGGTCAAGAGACTGTCCGTTCATGTGGTGGGCCATGTCATAGAAAGTTGCCAAATTGTACACATCTATGCCCAGAGAAATGTCATCCTGGACAATGCCCAAATCCTGAGAAATGCTGTAAAAAGGTTACTGTTCGTTGCAAATGCCAAACATTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCATATCATCGTGATGGTTGCGATCCAAAGGATATACCAAAAAATCAATTTGGAAATGCACTTATTCCGTGCAATTCTGATTGTAAAAGTAAAGTGCAGGTTGTTGAGTCAGAATTACAATTACGAAAATCTAGAGTTCCAGAGGTAAAAGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGAAAAAGGAGGGAAAGGGTAGTAGAATCCAAGGAAAAGACAAAACTACAGAAAATTGTTTCCACAATGAAGCAGCTCCTTCTATTTGTCTTCATTGTGGTCATGGTTCTTGCTGCTTCATATTATGGGTACAAGGGACTTTTATGGCTCTCTGATTGGATGAATGAAATTGATGAAAGAAGACAAAGATATTCTCGAATCAAATGA 2607 0.4733 MSSSTHRPPPPFSDSDSDGGSSTVEALRHSDLSDSIFKSYFTFSGHSTATATDLSKIRSFLTSSSSGALSCMICLERIKPSDPTWSCNSLCFAVFHLICIQSWARQASDLSAARAATRLPISPEKLPDAAVWNCPKCRVDYPKTHIPKTYLCFCGKLENPPSDDPWVLPHSCGEVCERPLKNNCGHHCLLLCHPGPCPSCPQLVKVRCFCGSHEDVRRCGFKDFSCESTCSKVLDCGVHRCVEICHRGACPPCRTRGVYSCQCGKRKEERECCDREFQCGVPCEKKLSCGKHVCEKGCHSGECGECPLQGKRTCPCGKRVYEGMPCDAPVRVCGATCDKMLPCGYHRCPERCHRGQCIVTCRTVVKKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHIEVPCGTEMDQKPPKCRKLCPITPLCRHELNRKPHKCHYGACPPCRLPCAEEYQCGHTCNLRCHGPKPPPNPEFTLKPKKKKIIHQSESVPGTPCPPCPELVWRSCVGQHIGTERMMVCSDKSQFSCENLCGNPLPCCNHYCTNTCHALENRSSMNQLVRGEPCEDCSLPCQKEREPKCPHHCPRPCHPGDCPPCKVLIKRSCHCGTMVHVFECIYYNSLSAKGQETVRSCGGPCHRKLPNCTHLCPEKCHPGQCPNPEKCCKKVTVRCKCQTLKKEWLCQDVQAAYHRDGCDPKDIPKNQFGNALIPCNSDCKSKVQVVESELQLRKSRVPEVKEPDNEKSVPKRRKRRERVVESKEKTKLQKIVSTMKQLLLFVFIVVMVLAASYYGYKGLLWLSDWMNEIDERRQRYSRIK* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03955 868 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 47 519 IPR034078 GO:0003700
Rops11g03955 868 SMART znfxneu3 592 623 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 236 255 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 289 308 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 633 651 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 396 415 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 509 554 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 343 363 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 423 442 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 184 202 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 696 718 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 210 232 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 SMART znfxneu3 480 501 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 CDD NF-X1-zinc-finger 172 220 - -
Rops11g03955 868 SUPERFAMILY RING/U-box 66 143 - -
Rops11g03955 868 CDD RING-CH-C4HC3_NFXL1 69 138 - -
Rops11g03955 868 CDD NF-X1-zinc-finger 333 382 - -
Rops11g03955 868 MobiDBLite consensus disorder prediction 1 24 - -
Rops11g03955 868 MobiDBLite consensus disorder prediction 784 808 - -
Rops11g03955 868 CDD NF-X1-zinc-finger 386 434 - -
Rops11g03955 868 CDD NF-X1-zinc-finger 279 326 - -
Rops11g03955 868 Pfam NF-X1 type zinc finger 417 441 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 236 254 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 396 414 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 490 500 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 184 201 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 509 518 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 289 307 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 343 361 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 591 601 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 Pfam NF-X1 type zinc finger 635 650 IPR000967 GO:0005634|GO:0008270
Rops11g03955 868 CDD NF-X1-zinc-finger 413 461 - -
Rops11g03955 868 CDD NF-X1-zinc-finger 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03955 Rops-Chr11 73732585 73742074 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Rops11g03955 zf-NF-X1 0.0041 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03955 K15683 - gmx:100799540 1563.51