Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03950 ATGGCTTCCGTTTCATCGAGTCCACGCACCGTTGAAGAGATCTTCAAGGACTACCACGCTCGACGCAATGCTCTCCTTCGTGCCCTCACCTATGATGTTGACGAGTTCTATTCCCTTTGTGATCCGGAAAAGGAGAACTTGTGCTTGTATGGGCACCCCAATGAATCATGGGAGGTTGCTCTACCAGCAGAGGAAGTTCCACCAGAACTTCCTGAACCAGCTCTTGGGATCAATTTTGCTAGAGATGGAATGAACCGTAGAGATTGGCTCTCATTGGTTGCTGTTCACAGTGATTGTTGGTTGCTCTCTGTGGCATTCTATTTTGGTGCCAGGCTAAATAGGAATGAGAGGAAGCGTCTATTCAGCATGATGAACGACCTGCCAACTCTCTTTGAAGTTGTAACGGAGAGAAAGCCTATAAAAGACAAGTCCACTACAGATAGTGGCAGCAAATCCCGGGGCAGCTTAAAGAGGTCAAATGATGAACATATCAGAGGCAATTCCAAATTAGTAGATGAAAGTAATGGGGAGGATGAGGAGGAGCATAGTGATACCCTTTGTGGGAGCTGTGGCGGAAATTACAACGCTGATGAGTTTTGGATTTGTTGTGACATATGTGAGAGATGGTTTCATGGAAAGTGTGTGAAGATCACTCCAGCAAAGGCTGCAAGTATTGAGCAATACAAATGCCCTTCTTGTAACTCTAAGAGAGGTAGGCAGTAG 723 0.4592 MASVSSSPRTVEEIFKDYHARRNALLRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVALPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMMNDLPTLFEVVTERKPIKDKSTTDSGSKSRGSLKRSNDEHIRGNSKLVDESNGEDEEEHSDTLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAASIEQYKCPSCNSKRGRQ* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03950 240 MobiDBLite consensus disorder prediction 141 179 - -
Rops11g03950 240 FunFam PHD finger alfin-like protein 179 235 - -
Rops11g03950 240 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0006355|GO:0042393
Rops11g03950 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Rops11g03950 240 SMART PHD_3 186 234 IPR001965 -
Rops11g03950 240 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Rops11g03950 240 Pfam PHD-finger 187 235 IPR019787 -
Rops11g03950 240 SUPERFAMILY FYVE/PHD zinc finger 176 237 IPR011011 -
Rops11g03950 240 CDD PHD_AL_plant 186 236 IPR044104 -
Rops11g03950 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Rops11g03950 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03950 Rops-Chr11 73673666 73678535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03950 1 240 Alfin-like Transcription Factor Family AT5G05610 75.934 2.74e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Rops11g03950 Alfin 1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03950 K26274 - zju:107413853 409.838