Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03948 ATGCTCAAAACTCAAAGAGCCACTCCACTAGTACTATCTTTGCACTTTGTAAGGATTTTCTTGGGCATGTGCATTAATTCAAAAAGTAAACTTTCTCCCTCAGACCAGGTCATGGAAAGTGAGTTCCACAACTCAGTTTTGCTTGAATTGTCTGCATCCGATGATTTGGAATCTTTCAAAAGGGAAGTGGAAGAGAAGGATTTTGATGTCAACGAGGCAGGATTTTGGTATGGAAGAAGAATTGGGTCAAAGAAGATGGGATATGAAAAGAGGACACCCCTCATGATTGCTTCTTTGTTTGGAAGCAGTAGGGTGATGAAGTATATTATTGCGACTGGCAAGGTTGATGTGAACATGGCCTATGGTTCTGAGAGGGTTCCTGCTCTTCATTGTGCTGTTTCTGGTGGCTCTGAATCCAACCTTGAGATTGTCAAGCTCTTGCTTGATGCTGGGGCAGATGCTCATTGCCTTGATGCCAGTGGTAATAAGCCTGTTAATCTGATTGCTCCTGCTTTTAATACTTTGTCAAAGTCAAAAAGGAAGGCTATGGAGTTATTGCTCAGAGGAATGGAGGGAGATAAAATCACCAACCAAGAGATGGAGGAGCTGAAGTTTACAGTGCCTTCTTTTCCATCAAAAGAAGGAACTGAGAAGAAAGAATATCCAGTTGATATATCATTGCCTGACATAAACAATGGTTTTTATGGAACAGATGAGTTTAGGATGTACATTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCATGACTGGACTGAGTGTCCATTCGTTCATCCAGGGGAGAATGCTAGGAGGAGAGACCCAAAAAAGTACCCTTACAGCTGCGTTCCATGCCCAGAATTTCGCAAAGGGACATGCCAGAAGGTGGATGCATGTGAATATGCACATGGCGTTTTTGAGTCATGGCTCCATCCTGCCCAATACCGAACAAGGCTTTGCAAAGATGAGATTGGCTGCTCTAGGAAAGTATGCTTCTTTGCTCACAAACCTGAAGAGTTACGCCCTTTGTATGCTTCCACCGGGTCAGCCATGCCTTCACCAAAATCTTTTTCGGCTAGTGCACTTGATGCAAAAGCAATGAGTCCATTGTCTCTTAGTTCCTCACCTTTGCCAATGTCAACCGTTTCAACTCCACTCATGTCTCCAATTGCAGCTGCTTCTTCATCTCTCAAGAGTGGTGGAAGCTCCTGGCAGAATAAAATCAATCTTACTCCACCTTCATTGCAGCTCCATAACAAGGAATTCAGTAAGATTGGTGATTTGAATCCAACTAACCTCTATGACCTGTTAGGATGTGTTGATACTTCTGTATTATCTCAATTACATGGTCTTTCAGCACAACCTTCAATATCTAGTCAATCACAATCTCCAAGTAGGCTTCAGCTGTGCCAAAACATGAACCATCTTTGGACAAGTTATTCATCTAATAACATTGCTTCCTCTCCCGTGAGAAAATCCTCAGCATTTGGGTTTGACTCATCAGCTGCTATGGCTGCAGCAGTGATGAATTCAAGGTCTGCTGCCTTTGCAAAGAGAAGCCAAAGTTTTATGGATCGTGGTGTGGCAAGACACCATCTTGGTGTGTCAGCTTCCAACCACTCCTCCAGGATGAGCTCTGGCCTTTCAGATTGGATTTCCCCTGATGGGGAACCAGATTGGAGCATAAATGGAGATGAGCTAAACAAGTTCAACAAATCTGCTTCTTGTAGGTTCAGAAATAATGGGGTAAATGCCTCCCCATTGGTACAGTCAGAACAAGCTGATGAGCCAGATGTCTCATGGGTTCATTCATTTGTTAAAGATGTTTCCTCTGAGAGTTCTGAGATATTTGGTGCTGAGAAGCAGCATTATGATCTCTGTAAAGAGAAGCCTTCACCATGGGTGGAACAGATGTATATGGAACAAGAGCAGATGGTATGGTAG 1944 0.4336 MLKTQRATPLVLSLHFVRIFLGMCINSKSKLSPSDQVMESEFHNSVLLELSASDDLESFKREVEEKDFDVNEAGFWYGRRIGSKKMGYEKRTPLMIASLFGSSRVMKYIIATGKVDVNMAYGSERVPALHCAVSGGSESNLEIVKLLLDAGADAHCLDASGNKPVNLIAPAFNTLSKSKRKAMELLLRGMEGDKITNQEMEELKFTVPSFPSKEGTEKKEYPVDISLPDINNGFYGTDEFRMYIFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGTCQKVDACEYAHGVFESWLHPAQYRTRLCKDEIGCSRKVCFFAHKPEELRPLYASTGSAMPSPKSFSASALDAKAMSPLSLSSSPLPMSTVSTPLMSPIAAASSSLKSGGSSWQNKINLTPPSLQLHNKEFSKIGDLNPTNLYDLLGCVDTSVLSQLHGLSAQPSISSQSQSPSRLQLCQNMNHLWTSYSSNNIASSPVRKSSAFGFDSSAAMAAAVMNSRSAAFAKRSQSFMDRGVARHHLGVSASNHSSRMSSGLSDWISPDGEPDWSINGDELNKFNKSASCRFRNNGVNASPLVQSEQADEPDVSWVHSFVKDVSSESSEIFGAEKQHYDLCKEKPSPWVEQMYMEQEQMVW* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03948 647 Gene3D - 280 342 - -
Rops11g03948 647 SMART c3hfinal6 314 337 IPR000571 GO:0046872
Rops11g03948 647 SMART c3hfinal6 279 305 IPR000571 GO:0046872
Rops11g03948 647 SMART ANK_2a 124 156 IPR002110 GO:0005515
Rops11g03948 647 SMART ANK_2a 89 119 IPR002110 GO:0005515
Rops11g03948 647 FunFam Zinc finger CCCH domain-containing protein 66 237 305 - -
Rops11g03948 647 Gene3D - 37 204 IPR036770 -
Rops11g03948 647 ProSiteProfiles Ankyrin repeat profile. 124 159 IPR002110 GO:0005515
Rops11g03948 647 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 304 IPR000571 GO:0046872
Rops11g03948 647 Pfam Ankyrin repeats (3 copies) 85 155 IPR002110 GO:0005515
Rops11g03948 647 SUPERFAMILY Ankyrin repeat 29 178 IPR036770 -
Rops11g03948 647 PANTHER UNKEMPT FAMILY MEMBER 49 608 IPR045234 -
Rops11g03948 647 ProSiteProfiles Zinc finger C3H1-type profile. 279 306 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03948 Rops-Chr11 73632028 73635953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03948 33 611 C2H2 Transcription Factor Family AT5G12850 38.685 5.73e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g03948 Ank_2 2.8e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03948 - - gmx:100783376 832.787